View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_203 (Length: 250)
Name: NF8810A_low_203
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_203 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33447609 - 33447847
Alignment:
| Q |
1 |
atgaagaggtttcaaaggtagnnnnnnncagaaactaagctatgagatcaatgttatattgttaatttactctgaatatcatttaataattagactttga |
100 |
Q |
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| T |
33447609 |
atgaagaggtttcaaaggtagaaaaaaacagaaattaagctatgagatcaatgtaatattgttaatttactctgaatatcatttaataattagactttga |
33447708 |
T |
|
| Q |
101 |
catgtatatttcttgttacacgcatataggctcttcaaacttatgtattgcctgacatgttcaagagcatttatgagactattacaaagggcaatcctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447709 |
catgtatatttcttgttacacgcatataggctcttcaaacttatgtattgcctgacatgttcaagagcatttatgagactattacaaagggcaatcctat |
33447808 |
T |
|
| Q |
201 |
gtgggataggctttcagttcctgcttcaactctatattc |
239 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
33447809 |
gtgggataggctttcagttcctgcttcaactctctattc |
33447847 |
T |
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