View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_209 (Length: 250)

Name: NF8810A_low_209
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_209
NF8810A_low_209
[»] chr1 (3 HSPs)
chr1 (10-236)||(10555285-10555511)
chr1 (59-188)||(29201108-29201237)
chr1 (88-187)||(23297813-23297912)
[»] chr2 (2 HSPs)
chr2 (59-187)||(17072206-17072330)
chr2 (111-170)||(19315330-19315387)
[»] chr4 (3 HSPs)
chr4 (85-188)||(42845296-42845398)
chr4 (93-187)||(48546137-48546230)
chr4 (111-157)||(49863058-49863103)
[»] chr3 (3 HSPs)
chr3 (102-188)||(14857883-14857966)
chr3 (59-122)||(35575240-35575304)
chr3 (85-186)||(45972403-45972504)
[»] chr5 (1 HSPs)
chr5 (59-188)||(11777411-11777535)
[»] chr7 (2 HSPs)
chr7 (78-186)||(21774052-21774156)
chr7 (138-191)||(44570123-44570175)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 10555285 - 10555511
Alignment:
Q  10 atgagatagagaggagtgagagagatctattaaagtgttagggtgtgttttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcga 109  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10555285 atgagatagagagaagtgagagagatctgttaaagtgttagggtgtgttttgcagaggaggattggaaagagtgaaaggattgaaaagaagggtttgcga 10555384  T
Q  110 aattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttccttgttgatgatcttgcttttgtt 209  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||    
T  10555385 aattaccaaaataccctatcatataagggtgtgtacaagagcggtatgggaaaaagggtgtctatgaatcatttaccttcttgatgatcgtgcttttgtt 10555484  T
Q  210 gtatcacaggttgctaaactgatgtcc 236  Q
    ||||| |||||||||||||||||||||    
T  10555485 gtatcgcaggttgctaaactgatgtcc 10555511  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 29201108 - 29201237
Alignment:
Q  59 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattacc-aaaataccctgtcatataagggtgtgtacaagagtggtatg 157  Q
    |||||||| |||| |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| || |  ||||||||     
T  29201108 ttgcagaggaggaatggagagagtgacaggattgaaaaaaagggtttgcgaaattaccaaaaataccctgccatataagggtgtatagagaagtggtat- 29201206  T
Q  158 ggaaaaagggtgtgtatgaatcattttcctt 188  Q
    ||||||||||||| |||||||||||||||||    
T  29201207 ggaaaaagggtgtttatgaatcattttcctt 29201237  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 23297813 - 23297912
Alignment:
Q  88 gattgaaaagaagggtttgcgaaattaccaaaa-taccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcc 186  Q
    ||||||||| |||| ||||| |||||||||||| |||||| |||||||||||||| || |  |||||||||  ||||||||||| |||||||||||||||    
T  23297813 gattgaaaaaaaggatttgcaaaattaccaaaaataccctctcatataagggtgtatagagaagtggtatga-aaaaagggtgtttatgaatcattttcc 23297911  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 17072330 - 17072206
Alignment:
Q  59 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgg 158  Q
    |||||||  ||||||||| || |||||||||||||||| | ||||||||||||||||||| |||||||| |||||  ||| || ||||||||||||||||    
T  17072330 ttgcagatgaggattggagagggtgaaaggattgaaaata-gggtttgcgaaattaccaatataccctgccatat-ggggggtatacaagagtggtatgg 17072233  T
Q  159 gaaaaagggtgtgtatgaatcattttcct 187  Q
    |  ||||| ||| ||||||||||||||||    
T  17072232 g--aaaggatgtctatgaatcattttcct 17072206  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 19315387 - 19315330
Alignment:
Q  111 attaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgt 170  Q
    |||||||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  19315387 attaccaaaataccctctcacataagg-tgtatacaagagtggtat-ggaaaaagggtgt 19315330  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 42845398 - 42845296
Alignment:
Q  85 aaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcatttt 184  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||  | ||| |||| | || || ||||||||||| |||||||||| |||||||||||||    
T  42845398 aaggattgaaaaaaagtgtttgcgaaattaccaaaataccttgctagataggggtatatagaaaagtggtatggg-aaaagggtgtttatgaatcatttt 42845300  T
Q  185 cctt 188  Q
    ||||    
T  42845299 cctt 42845296  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 48546137 - 48546230
Alignment:
Q  93 aaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcct 187  Q
    |||||||| |||||| ||||||||||||||||||| || ||| |||||| || || |||| ||| | ||||| ||||| ||||||||||||||||    
T  48546137 aaaagaagtgtttgctaaattaccaaaataccctgccagataggggtgtatagaaaagtgatat-gaaaaaacggtgtttatgaatcattttcct 48546230  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 49863103 - 49863058
Alignment:
Q  111 attaccaaaataccctgtcatataagggtgtgtacaagagtggtatg 157  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  49863103 attaccaaaataccctctcatat-agggtgtgtacaagaatggtatg 49863058  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 14857883 - 14857966
Alignment:
Q  102 gtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcctt 188  Q
    ||||||||||||||||| ||||||||||||||  ||| || ||||||||||||||  || ||||| ||| |||||||||||||||||    
T  14857883 gtttgcgaaattaccaatataccctgtcatat-ggggggtatacaagagtggtat--gagaaaggatgtctatgaatcattttcctt 14857966  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 35575304 - 35575240
Alignment:
Q  59 ttgcagagaaggattggaaagagtgaaaggattgaaaagaaggg-tttgcgaaattaccaaaata 122  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||||||    
T  35575304 ttgcagaggaggattggagagagtgaaaggattgaaaaaaagggatttgtgaaattactaaaata 35575240  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 45972403 - 45972504
Alignment:
Q  85 aaggattgaaaagaagg-gtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattt 183  Q
    |||||||||||| || | |||||  |||||| |||||||||||| || ||| |||||| || || ||||||||| | |||||| ||| ||||||||||||    
T  45972403 aaggattgaaaaaaaagtgtttgtaaaattatcaaaataccctgccagataggggtgtatagaaaagtggtatgtg-aaaaggatgtttatgaatcattt 45972501  T
Q  184 tcc 186  Q
    |||    
T  45972502 tcc 45972504  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 11777535 - 11777411
Alignment:
Q  59 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgg 158  Q
    ||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| |||||||| |||||   ||   |||||||||||| |||||||||     
T  11777535 ttgcagaga-ggattggagagagtgaaagggttgaaga-aagggtttgtgaaatgaccaaaatgccctgc--taatggggtgtgtacaaaagtggtatga 11777440  T
Q  159 gaaaaagggtgtgtatgaatcattttcctt 188  Q
    || || |||||| |||||||||||||||||    
T  11777439 gacaa-gggtgtctatgaatcattttcctt 11777411  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 21774156 - 21774052
Alignment:
Q  78 agagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaa 177  Q
    ||||||||||||||||| | ||||||||| |||| ||||||||| |||| ||  ||  |||||||||||| ||||||||||| | |||||||| ||||||    
T  21774156 agagtgaaaggattgaaga-aagggtttgtgaaaataccaaaatgccct-tctaatg-gggtgtgtacaaaagtggtatggg-acaagggtgtttatgaa 21774061  T
Q  178 tcattttcc 186  Q
    |||||||||    
T  21774060 tcattttcc 21774052  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 44570123 - 44570175
Alignment:
Q  138 gtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttccttgtt 191  Q
    |||||||||| ||||||||||  ||| |||||| ||||||||||||||||||||    
T  44570123 gtgtgtacaaaagtggtatggctaaa-gggtgtttatgaatcattttccttgtt 44570175  T

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