View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_213 (Length: 250)
Name: NF8810A_low_213
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_213 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 38567070 - 38567284
Alignment:
| Q |
14 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
113 |
Q |
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| T |
38567070 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
38567169 |
T |
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| Q |
114 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
213 |
Q |
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| T |
38567170 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38567269 |
T |
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| Q |
214 |
ttgtaagccgccgcc |
228 |
Q |
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||||||||||||||| |
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| T |
38567270 |
ttgtaagccgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 38525945 - 38526162
Alignment:
| Q |
14 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
113 |
Q |
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|||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38525945 |
ttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaata |
38526044 |
T |
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| Q |
114 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526045 |
aacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38526144 |
T |
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| Q |
214 |
ttgtaagccgccgcctga |
231 |
Q |
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|||||||||||||||||| |
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| T |
38526145 |
ttgtaagccgccgcctga |
38526162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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