View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_216 (Length: 250)
Name: NF8810A_low_216
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_216 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 38323361 - 38323142
Alignment:
| Q |
13 |
gtttttgaggttaagaagattcatggattgttgtttaaatttgggttggaattggatgtttttgttggaagtgctttggttactacttatttgaaatttt |
112 |
Q |
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| T |
38323361 |
gtttttgaggttaagaagattcatggattgttgtttaaatttgggttggaattggatgtttttgttggaagtgctttggttactacttatttgaaatttt |
38323262 |
T |
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| Q |
113 |
ggttggttgtggatgcacatgaggtgtttgaggaattgcctgttagagatgttgtgctttggaattcgatggttaatggatatgcgcagattgggtgctt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38323261 |
ggttggttgtggatgcacatgaggtgtttgaggaattgcctgttagagatgttgtgctttggaattcgatggttaatggatatgcacagattgggtgctt |
38323162 |
T |
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| Q |
213 |
tgaggaggctttggggatgt |
232 |
Q |
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|||||||||||||||||||| |
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| T |
38323161 |
tgaggaggctttggggatgt |
38323142 |
T |
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