View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_218 (Length: 250)
Name: NF8810A_low_218
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_218 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 19673 - 19440
Alignment:
| Q |
16 |
acatcaggaatggatgcaatcagttcatcagtaatttcatcaaacatattatccacaccaatttgagaactgacttgcttctacaaaatagtgagaaaac |
115 |
Q |
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| T |
19673 |
acatcaggaatggatgcaatcagttcatcagtaatgtcatcaaacatattatccacaccaatttgagaactgacttgcttctacaaaatagtgagaaaac |
19574 |
T |
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| Q |
116 |
aatatataggttattctttgtaaacactatcatggtaaaatataatgggtatgcagtggtaataaattacctgtcttttagcagtattagtttcagtctg |
215 |
Q |
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| T |
19573 |
aatatataggttattctttgtaaacactatcatggtaaaatataatgggtatgcagtggtaataaattacctgtcttttagcagtattagtttcagtctg |
19474 |
T |
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| Q |
216 |
accattagatgtctcaccatattcttcgacatcc |
249 |
Q |
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| T |
19473 |
accattagatgtctcaccattttcatggacatcc |
19440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 24674658 - 24674891
Alignment:
| Q |
16 |
acatcaggaatggatgcaatcagttcatcagtaatttcatcaaacatattatccacaccaatttgagaactgacttgcttctacaaaatagtgagaaaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24674658 |
acatcaggaatggatgcaatcagttcatcagtaatgtcatcaaacatattatccacaccaatttgagaactgacttgcttctacaaaatagtgagaaaac |
24674757 |
T |
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| Q |
116 |
aatatataggttattctttgtaaacactatcatggtaaaatataatgggtatgcagtggtaataaattacctgtcttttagcagtattagtttcagtctg |
215 |
Q |
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| T |
24674758 |
aatatataggttattctttgtaaacactatcatggtaaaatataatgggtatgcagtggtaataaattacctgtcttttagcagtattagtttcagtctg |
24674857 |
T |
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| Q |
216 |
accattagatgtctcaccatattcttcgacatcc |
249 |
Q |
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| T |
24674858 |
accattagatgtctcaccattttcatggacatcc |
24674891 |
T |
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