View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_219 (Length: 249)
Name: NF8810A_low_219
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_219 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 25633927 - 25633835
Alignment:
| Q |
27 |
acatttttcacaagaaactcgtcattttatgt--atatatcatttctttggtgtttcagcttatataccagaatagttttcagagaaatatgc |
117 |
Q |
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| T |
25633927 |
acatttttcacaagaaactcgtcattttatgtgtatatatcatttctttggtgtttcagcttatataccagaatagttttcagagaaatatgc |
25633835 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 25633788 - 25633747
Alignment:
| Q |
208 |
cgtcaccgaagtaaataggaggccgaggaggcacaaccagtt |
249 |
Q |
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| T |
25633788 |
cgtcaccgaggtaaataggaggccgaggaggcacaaacagtt |
25633747 |
T |
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