View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_22 (Length: 436)
Name: NF8810A_low_22
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_22 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Original strand, 434413 - 434834
Alignment:
| Q |
15 |
aaagaactgacctaaactagagtacataatttgaaacaaattacagtatatatttggattacacaaacttcattttacgttaacatgtcaaatattaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
434413 |
aaagaactgacctaaactagagtacataatttgaaacaaattacagtatatatttggattacacaatcttcattttatgttaacatgtcaaatattaatc |
434512 |
T |
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| Q |
115 |
cttaatccataattacacatttcagtgaaaatttgattcaattgagactaacgcccaattcaatggcaatggtataactaatcttcaattaatttgaatc |
214 |
Q |
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| T |
434513 |
cttaatccataattacacatttcagtgaaaatttgattcaattgagactaacgcccaattcaatggcaatggtataactaatcttcaattaatttgaatc |
434612 |
T |
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| Q |
215 |
ccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaa |
314 |
Q |
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| T |
434613 |
ccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaa |
434712 |
T |
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| Q |
315 |
tttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaagacaacgaaaa-ccc |
413 |
Q |
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| T |
434713 |
tttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaattggaagacgacgaaaatccc |
434812 |
T |
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| Q |
414 |
taatcttaaaatgagatccatga |
436 |
Q |
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| T |
434813 |
taatctt-aaatgagatccatga |
434834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 43485622 - 43485786
Alignment:
| Q |
37 |
tacataatttgaaacaaattacagtatatatttggattacacaaacttcattttacgttaacatgtcaaatattaatccttaatccataattacacattt |
136 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||||||||||| ||||||||| | |
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| T |
43485622 |
tacataatttgaatcaaattacagtatatatttggcttacacaaacttcaatttatggtaacatgtcaaattttaatccttaatccagaattacacagct |
43485721 |
T |
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| Q |
137 |
cagtgaaaatttgattcaattgagactaacgcccaattcaatggcaatggtataactaatcttca |
201 |
Q |
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| T |
43485722 |
cagtgtaaatttgattcagttgagactaaagctcaattcaatggcaatggtataactaatcttca |
43485786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 47870624 - 47870681
Alignment:
| Q |
115 |
cttaatccataattacacatttcagtgaaaatttgattcaattgagactaacgcccaa |
172 |
Q |
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| T |
47870624 |
cttaatccagaattacataattcagtgaaaatttgattcaattgagactaaagcccaa |
47870681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 17512942 - 17512780
Alignment:
| Q |
161 |
actaacgcccaattcaatggcaatggtataa--ctaatcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaa |
258 |
Q |
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||||||||| |||||||||||||||||| || ||||| |||||| | |||||||||||| |||||| ||| || |||||||||||||||||||||| |
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| T |
17512942 |
actaacgcctaattcaatggcaatggtacaaaactaatgttcaatgagattgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaa |
17512843 |
T |
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| Q |
259 |
ggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaatttaatt |
321 |
Q |
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| T |
17512842 |
ggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatgaattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
327 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
400 |
Q |
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||||||| ||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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