View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_220 (Length: 249)
Name: NF8810A_low_220
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_220 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 26327936 - 26328177
Alignment:
| Q |
16 |
atacaatcatacatcttatggacttggtacgcaaatgtgtgacataagacttacgttgaatgaaaaa-gtgaatgttaataacttaatgagaagattcgt |
114 |
Q |
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| T |
26327936 |
atacaatcatacatcttatggacttggtacgcaaatgtgtgacataagacttaggttgaattaaaaaagtgaatgttaataacttaatgagaagattcat |
26328035 |
T |
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| Q |
115 |
tctttcnnnnnnnn-------gtgagaagacctatttatcaaatgtcttaaggtttgttataaaatgtggtgtcaaattctcttcgtatatagatgatct |
207 |
Q |
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| T |
26328036 |
tctttcaaaaaaaaaaaaaaagtgagaagacctatttatcaaatgtcttaaagtttgttataaaatgtgatgtcaaattctcttcgtatatagatgatct |
26328135 |
T |
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| Q |
208 |
tagtacaaatgataatctttcaagtttcttatagataaatag |
249 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26328136 |
tagtacaaatgataatctttcaggtttcttatagataaatag |
26328177 |
T |
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