View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_226 (Length: 249)
Name: NF8810A_low_226
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_226 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 32409484 - 32409711
Alignment:
| Q |
10 |
atggacatcaaatatgtttatatgacaaaaccttgtcaaatcaaaaattgttcaaatctttatctccatgttggttcaagcacaaacatgccctaattct |
109 |
Q |
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| T |
32409484 |
atggacttcaaatatgtttatatgacaaaaccttgtcaaatcaaaaattgttcaaatctttatctccatgttggttcaagcacaaacatgccctaattct |
32409583 |
T |
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| Q |
110 |
ttttgcaaggattgtacacatccttttattggactttggtgatggctccatttgtatgataggtgatgactgcactttcacatcaggtgacagatccatt |
209 |
Q |
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| T |
32409584 |
ttttgcaaggattgtacacatccttttattggactttggtgatggctccatttgtatgataggtgatgactacactttcacatcatgtgacagatccatt |
32409683 |
T |
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| Q |
210 |
tcaacatcaagcgatgcttctactttca |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32409684 |
tcaacatcaagcgatgcttctactttca |
32409711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 3259349 - 3259485
Alignment:
| Q |
48 |
aatcaaaaattgttcaaatctttatctccatgttggttcaagcacaaacatgc-cctaattctttttgcaaggattgtacacatccttttattggacttt |
146 |
Q |
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| T |
3259349 |
aatcaaatgttgttcaaacctttatctctatgctggttcaagcataaacatgcacccatttttttttgcaaatcttgtaaagatacttctattggacttt |
3259448 |
T |
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| Q |
147 |
ggtgatggctccatttgtatgataggtgatgactgca |
183 |
Q |
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| T |
3259449 |
ggtggtggctccatttccatgataggtaatgactgca |
3259485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 3322379 - 3322508
Alignment:
| Q |
50 |
tcaaaaattgttcaaatctttatctccatgttggttcaagcacaaacatgccctaattctttttgcaaggattgtacacatccttttattggactttggt |
149 |
Q |
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||||| |||||||||| ||||||||| ||| ||||||||||| ||||||| | ||||||||||||| |||| | || ||| |||||||||||||| |
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| T |
3322379 |
tcaaacattgttcaaacctttatctctatgctggttcaagcataaacatgtacccattctttttgcaaatcctgtaaagatacttctattggactttggt |
3322478 |
T |
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| Q |
150 |
gatggctccatttgtatgataggtgatgac |
179 |
Q |
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| T |
3322479 |
tgtggctccattaccatgataggtgatgac |
3322508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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