View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_227 (Length: 249)

Name: NF8810A_low_227
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_227
NF8810A_low_227
[»] chr4 (10 HSPs)
chr4 (1-239)||(8654749-8654987)
chr4 (9-239)||(47541151-47541381)
chr4 (1-239)||(3129658-3129893)
chr4 (52-239)||(7662966-7663153)
chr4 (34-239)||(2631624-2631829)
chr4 (33-239)||(20675248-20675454)
chr4 (89-239)||(23873240-23873390)
chr4 (89-239)||(55298846-55298996)
chr4 (43-239)||(8486699-8486895)
chr4 (171-239)||(49926112-49926180)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-239)||(134530-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-239)||(312357-312595)
scaffold0002 (1-239)||(327811-328049)
[»] chr5 (4 HSPs)
chr5 (1-239)||(10486596-10486834)
chr5 (4-239)||(34481173-34481408)
chr5 (122-239)||(587742-587859)
chr5 (147-239)||(35122528-35122620)
[»] chr3 (9 HSPs)
chr3 (1-239)||(49731608-49731846)
chr3 (1-239)||(30167020-30167258)
chr3 (33-239)||(2813208-2813414)
chr3 (33-239)||(29309634-29309840)
chr3 (33-239)||(6176186-6176392)
chr3 (115-239)||(9379323-9379447)
chr3 (164-239)||(23601999-23602074)
chr3 (172-239)||(25872955-25873022)
chr3 (164-221)||(8943596-8943653)
[»] chr1 (7 HSPs)
chr1 (1-239)||(21528387-21528629)
chr1 (1-237)||(36306012-36306248)
chr1 (16-239)||(37530792-37531015)
chr1 (89-239)||(32353061-32353211)
chr1 (33-239)||(48073139-48073345)
chr1 (155-239)||(48265548-48265632)
chr1 (164-239)||(30970447-30970522)
[»] chr7 (6 HSPs)
chr7 (1-239)||(15653381-15653619)
chr7 (1-190)||(46623968-46624157)
chr7 (33-239)||(13440279-13440485)
chr7 (33-239)||(12378436-12378639)
chr7 (164-239)||(45943077-45943152)
chr7 (107-230)||(43105546-43105669)
[»] chr8 (4 HSPs)
chr8 (1-239)||(7452578-7452816)
chr8 (34-239)||(16420719-16420924)
chr8 (165-230)||(12134563-12134628)
chr8 (187-239)||(19384572-19384624)
[»] chr2 (12 HSPs)
chr2 (1-239)||(45421745-45421984)
chr2 (34-239)||(13550350-13550555)
chr2 (33-235)||(26894320-26894522)
chr2 (33-235)||(26899759-26899961)
chr2 (89-239)||(43627725-43627875)
chr2 (140-239)||(31085452-31085551)
chr2 (140-239)||(33548098-33548197)
chr2 (34-160)||(13550882-13551008)
chr2 (181-240)||(36804137-36804196)
chr2 (181-239)||(22052853-22052911)
chr2 (192-240)||(36804352-36804400)
chr2 (34-75)||(26679225-26679266)
[»] scaffold0418 (1 HSPs)
scaffold0418 (52-239)||(7901-8088)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-113)||(4229-4337)
[»] chr6 (7 HSPs)
chr6 (4-239)||(25318080-25318315)
chr6 (4-239)||(26205574-26205809)
chr6 (28-239)||(23347170-23347381)
chr6 (89-239)||(15674051-15674205)
chr6 (184-239)||(33630323-33630378)
chr6 (210-239)||(1683266-1683295)
chr6 (165-201)||(4474962-4474998)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8654749 - 8654987
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654749 gctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 8654848  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8654849 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggagga 8654948  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8654949 ggacttgttagcggagtgtagggctttacttcttgatgt 8654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 47541381 - 47541151
Alignment:
Q  9 ggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaat 108  Q
    |||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  109 aagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgt 208  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| |||| |||||||  |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  209 cagcggagtgtagggctttacttcttgatgt 239  Q
     ||||||||||||||||||||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttgatgt 47541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3129658 - 3129893
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  3129658 gctaggagggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaa 3129757  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||   ||||||  |||||||||||||||| | ||||||| |||||||||    
T  3129758 cagagaataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggagga 3129857  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |    ||| ||||||||||||||||||||||||||||||    
T  3129858 g---atgttagcggagtgtagggctttacttcttgatgt 3129893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 7662966 - 7663153
Alignment:
Q  52 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 151  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  152 agtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||  |||| |||| ||||||||||| ||||| ||||||| ||||||||||||  ||| || |||||||| ||||||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7663153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 2631829 - 2631624
Alignment:
Q  34 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 133  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  2631829 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 2631730  T
Q  134 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttct 233  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  ||||||||||||||||||||    
T  2631729 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct 2631630  T
Q  234 tgatgt 239  Q
    ||||||    
T  2631629 tgatgt 2631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 20675454 - 20675248
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| ||| || ||||| ||||||    
T  20675454 gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg 20675355  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | | |||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||   |  ||||||||| |||||||||    
T  20675354 ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc 20675255  T
Q  233 ttgatgt 239  Q
    |||||||    
T  20675254 ttgatgt 20675248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 23873240 - 23873390
Alignment:
Q  89 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 188  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  189 gctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    || |||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23873390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 55298996 - 55298846
Alignment:
Q  89 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 188  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  189 gctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    || |||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 55298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 8486699 - 8486895
Alignment:
Q  43 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 142  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  143 attcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||| | ||||||||   |||||||||||||||||||||| |||| ||||||| |||| |||  ||   |||||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgt 8486895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 49926112 - 49926180
Alignment:
Q  171 gtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||| || || ||||||  |||||||||||| |||| || ||||||||||||||| || ||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgt 49926180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 134530 - 134768
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134530 gctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 134629  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  134630 cagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggagga 134729  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  134730 ggacttgttagcggagtgtagggctttacttcttgatgt 134768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 312357 - 312595
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312357 gctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 312456  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  312457 cagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggagga 312556  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  312557 ggacttgttagcggagtgtagggctttacttcttgatgt 312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 327811 - 328049
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327811 gctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 327910  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  327911 cagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggagga 328010  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  328011 ggacttgttagcggagtgtagggctttacttcttgatgt 328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10486596 - 10486834
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  10486596 gctaggagggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaa 10486695  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    || |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  10486696 catagaataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggagga 10486795  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  10486796 ggacatgttagcggagtgtagggctttacttcttgatgt 10486834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 34481408 - 34481173
Alignment:
Q  4 aggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 103  Q
    ||||| ||||| ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  | ||  || || |||||||||||||||    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  104 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagga 203  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  204 cttgtcagcggagtgtagggctttacttcttgatgt 239  Q
     |||  || |||||||||||||||||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttgatgt 34481173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 587859 - 587742
Alignment:
Q  122 tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtag 221  Q
    ||||| ||||||| |||||   ||||||||| ||||||| | | ||||||||||| |||||| | ||| |||||||||||||  ||| || |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  222 ggctttacttcttgatgt 239  Q
    ||||||||||||||||||    
T  587759 ggctttacttcttgatgt 587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 35122528 - 35122620
Alignment:
Q  147 ggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||| | ||||||  |||||||||||||||||||||||||   |||||||||   || | || ||||  |||||||||||| ||||||||    
T  35122528 ggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagaggagcttagggctttactgcttgatgt 35122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 49731608 - 49731846
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  49731608 gctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaa 49731707  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||    
T  49731708 cagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggagga 49731807  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||| ||||  |||||||||||||||||||||||||||||    
T  49731808 ggagttgttggcggagtgtagggctttacttcttgatgt 49731846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30167020 - 30167258
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||||| |||||  || |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||    
T  30167020 gctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaa 30167119  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    ||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| |||||||||    
T  30167120 cagagaataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggagga 30167219  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||  ||| ||||||||||||| ||||||||||||||||    
T  30167220 ggagatgttagcggagtgtaggactttacttcttgatgt 30167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 2813208 - 2813414
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  2813208 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 2813307  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  |||||||||||||||||||    
T  2813308 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 2813407  T
Q  233 ttgatgt 239  Q
    |||||||    
T  2813408 ttgatgt 2813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 29309840 - 29309634
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| ||||| ||||||    
T  29309840 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 29309741  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | ||||| |||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  ||||||||||| |||||||    
T  29309740 ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc 29309641  T
Q  233 ttgatgt 239  Q
    |||||||    
T  29309640 ttgatgt 29309634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 6176186 - 6176392
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||| ||||||||||| |||||| || || ||||||    
T  6176186 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg 6176285  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| | || |||||||||||| |||  ||  |||||||||||||||||||    
T  6176286 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc 6176385  T
Q  233 ttgatgt 239  Q
    |||||||    
T  6176386 ttgatgt 6176392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 9379447 - 9379323
Alignment:
Q  115 atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcgg 214  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| |||| |||||||||||   ||| |||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  215 agtgtagggctttacttcttgatgt 239  Q
    |||||||||| ||||| ||||||||    
T  9379347 agtgtagggcattactacttgatgt 9379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 23602074 - 23601999
Alignment:
Q  164 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||||||||||| |||||| |||| |||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 25872955 - 25873022
Alignment:
Q  172 tggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||||||||| |||| |||||||||||  |||  || ||||||||||||||||||| |||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgt 25873022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  164 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtag 221  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21528629 - 21528387
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21528629 gctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaa 21528530  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    ||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||  |||||||||    
T  21528529 cagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggagga 21528430  T
Q  201 ggacttgtcagcggag----tgtagggctttacttcttgatgt 239  Q
    |||| ||| ||||| |     ||||||||||||||||||||||    
T  21528429 ggacatgttagcggtggagacgtagggctttacttcttgatgt 21528387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36306248 - 36306012
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||  || |||| ||||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  36306248 gctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaa 36306149  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    | ||||||||| | |||| ||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||| |||| ||||    
T  36306148 cggagaataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaagga 36306049  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgat 237  Q
    |||  ||| || |||||||||||||||||||||||||    
T  36306048 ggagatgttagaggagtgtagggctttacttcttgat 36306012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 37531015 - 37530792
Alignment:
Q  16 gatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta 115  Q
    ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||    
T  37531015 gatggggctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagacta 37530916  T
Q  116 tgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcgga 215  Q
    ||| ||||||||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||  |||  || |||    
T  37530915 tgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagagga 37530816  T
Q  216 gtgtagggctttacttcttgatgt 239  Q
    ||||||||||||||||||||||||    
T  37530815 gtgtagggctttacttcttgatgt 37530792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 32353061 - 32353211
Alignment:
Q  89 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 188  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  189 gctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    || |||| ||||||| |||  ||  ||||||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgt 32353211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 48073139 - 48073345
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  48073139 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 48073238  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||  |||||||||||| |||  ||  |||||| ||||||||||||    
T  48073239 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc 48073338  T
Q  233 ttgatgt 239  Q
    |||||||    
T  48073339 ttgatgt 48073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 48265548 - 48265632
Alignment:
Q  155 ggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgatgt 48265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 30970447 - 30970522
Alignment:
Q  164 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  ||   |||||||||||||| ||||||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgt 30970522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15653381 - 15653619
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  15653381 gctaggagggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaa 15653480  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    | ||||||||| | |||||| ||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||| |||||||||    
T  15653481 cggagaataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggagga 15653580  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||  ||| ||||||||||||||||||||||||||||||    
T  15653581 ggagatgttagcggagtgtagggctttacttcttgatgt 15653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 46624157 - 46623968
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||| |||||||  || |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||    
T  46624157 gctaggagggttagagatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaa 46624058  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggc 190  Q
    | ||||||||| | |||||||||||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624057 cggagaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 13440485 - 13440279
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  13440485 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 13440386  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | |||||||||||||||| ||||||||   ||||||||||||||||||| || |||  |||||||||||| |||  ||  |||||| ||||||||||||    
T  13440385 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc 13440286  T
Q  233 ttgatgt 239  Q
    |||||||    
T  13440285 ttgatgt 13440279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 12378436 - 12378639
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| |||||||||||||| | ||||  || |  | ||| |||||||||||||  ||||||||| | |||||||||||| | |||    
T  12378436 gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg 12378535  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
    || | |||| | ||| ||| |||||||| ||||| |||| |||| || |||||||||| ||||||||||||  ||| |||||||||||||||   |||||    
T  12378536 ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc---acttc 12378632  T
Q  233 ttgatgt 239  Q
    |||||||    
T  12378633 ttgatgt 12378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 45943152 - 45943077
Alignment:
Q  164 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||||||||| |||| || |||| |||||||||||| |||  || |||||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 45943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  107 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 206  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  207 gtcagcggagtgtagggctttact 230  Q
    || ||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7452816 - 7452578
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    ||||||||||||||||||||  || |||| ||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  7452816 gctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaa 7452717  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggagga 200  Q
    | ||||||||| |||||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||| |||||||||    
T  7452716 cggagaataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggagga 7452617  T
Q  201 ggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||  || | || |||||||||||||||||||||||||||    
T  7452616 ggtgttattagaggagtgtagggctttacttcttgatgt 7452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 16420719 - 16420924
Alignment:
Q  34 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 133  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  16420719 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 16420818  T
Q  134 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttct 233  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  ||| ||||||||||||||||    
T  16420819 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T
Q  234 tgatgt 239  Q
     |||||    
T  16420919 cgatgt 16420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  165 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttact 230  Q
    |||||||||| | |||| |||||||  ||||||||||||||||  || ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 19384572 - 19384624
Alignment:
Q  187 tggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||| ||||||||||||  ||| || |||||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgt 19384624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45421984 - 45421745
Alignment:
Q  1 gctaggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaa 100  Q
    |||||||||||||| |||||  || |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||    
T  45421984 gctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaa 45421885  T
Q  101 cagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggctgtgggagg 199  Q
    ||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||    
T  45421884 cagagaataagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggagg 45421785  T
Q  200 aggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||  ||| |||||||||||||||||| |||||||||||    
T  45421784 aggagatgttagcggagtgtagggcttttcttcttgatgt 45421745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 13550555 - 13550350
Alignment:
Q  34 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 133  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||| ||||||     
T  13550555 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550456  T
Q  134 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttct 233  Q
    | ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||||| |||||||||  || |||||| ||||||||| ||||    
T  13550455 tttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattct 13550356  T
Q  234 tgatgt 239  Q
    ||||||    
T  13550355 tgatgt 13550350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | ||||||    
T  26894320 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26894419  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| |||| |||||||||||| |||  ||  |||||||||||||||||||    
T  26894420 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26894519  T
Q  233 ttg 235  Q
    |||    
T  26894520 ttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
Q  33 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 132  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | ||||||    
T  26899759 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26899858  T
Q  133 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttc 232  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| |||| |||||||||||| |||  ||  |||||||||||||||||||    
T  26899859 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26899958  T
Q  233 ttg 235  Q
    |||    
T  26899959 ttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 43627875 - 43627725
Alignment:
Q  89 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 188  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  ||||||||   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  189 gctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    || |||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 43627725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 31085452 - 31085551
Alignment:
Q  140 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||| ||||||||||||| | |||||||||||||| | |||||||| | ||||||||||||  ||| ||| ||||||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgt 31085551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 33548197 - 33548098
Alignment:
Q  140 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 33548098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 13551008 - 13550882
Alignment:
Q  34 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 133  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||| ||||||     
T  13551008 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550909  T
Q  134 tatctgttgattcggagcagtgggggg 160  Q
    | |||||||||||||||||||||||||    
T  13550908 tttctgttgattcggagcagtgggggg 13550882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 36804196 - 36804137
Alignment:
Q  181 aggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgtc 240  Q
    |||||||||  ||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 22052911 - 22052853
Alignment:
Q  181 aggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||| |||| |||||||||||| |||  || |||||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 22052853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 36804400 - 36804352
Alignment:
Q  192 gtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgtc 240  Q
    ||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
Q  34 ttttggttggataggtggttaggggatgttcctttttgtgtc 75  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  26679266 ttttggttggataggtgggttggtgatgttcctttttgtgtc 26679225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 8088 - 7901
Alignment:
Q  52 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 151  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  152 agtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||  |||| |||| ||||||||||| ||||| ||||||| ||||||||||||  ||| || |||||||| ||||||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7901  T

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Target: scaffold0131 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 4229 - 4337
Alignment:
Q  5 ggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacaga 104  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  4229 ggagggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaataga 4328  T
Q  105 gaataagtt 113  Q
    |||||||||    
T  4329 gaataagtt 4337  T

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Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 25318315 - 25318080
Alignment:
Q  4 aggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 103  Q
    ||||| ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || ||||||||||||||     
T  25318315 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 25318216  T
Q  104 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagga 203  Q
    |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||| ||||||||||||    
T  25318215 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 25318116  T
Q  204 cttgtcagcggagtgtagggctttacttcttgatgt 239  Q
     |||  || |||||||||||||||||||||||||||    
T  25318115 gttgctagaggagtgtagggctttacttcttgatgt 25318080  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 26205809 - 26205574
Alignment:
Q  4 aggagggttggagatggagctaataccttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag 103  Q
    ||||| ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || ||||||||||||||     
T  26205809 aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa 26205710  T
Q  104 agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagga 203  Q
    |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||| ||||||||||||    
T  26205709 agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga 26205610  T
Q  204 cttgtcagcggagtgtagggctttacttcttgatgt 239  Q
     |||  || |||||||||||||||||||||||||||    
T  26205609 gttgctagaggagtgtagggctttacttcttgatgt 26205574  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 23347170 - 23347381
Alignment:
Q  28 accttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag 127  Q
    |||| ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |    
T  23347170 acctcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccg 23347269  T
Q  128 acttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgtcagcggagtgtagggcttt 227  Q
    ||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| |||  ||  ||||||||||||||    
T  23347270 acttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcttt 23347369  T
Q  228 acttcttgatgt 239  Q
    ||||||||||||    
T  23347370 acttcttgatgt 23347381  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 15674205 - 15674051
Alignment:
Q  89 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt 184  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  |||||    ||   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  185 tgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    |||||| |||||||||||| |||  ||  ||||| ||||||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgt 15674051  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 33630378 - 33630323
Alignment:
Q  184 ttgtggctgtgggaggaggacttgtcagcggagtgtagggctttacttcttgatgt 239  Q
    ||||||| ||||||||||||  ||| ||||||||||||||||||| || |||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgt 33630323  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 1683295 - 1683266
Alignment:
Q  210 agcggagtgtagggctttacttcttgatgt 239  Q
    ||||||||||||||||||||||||||||||    
T  1683295 agcggagtgtagggctttacttcttgatgt 1683266  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 4474998 - 4474962
Alignment:
Q  165 gtggaggtggagacgtaggttgtggctgtgggaggag 201  Q
    |||||||||||||||||||||||||  ||||||||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggag 4474962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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