View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_228 (Length: 248)

Name: NF8810A_low_228
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_228
NF8810A_low_228
[»] chr4 (2 HSPs)
chr4 (15-229)||(20302181-20302385)
chr4 (15-54)||(20300928-20300967)
[»] chr5 (13 HSPs)
chr5 (38-229)||(30746466-30746661)
chr5 (38-229)||(30680034-30680229)
chr5 (38-229)||(30056998-30057193)
chr5 (21-185)||(30433200-30433365)
chr5 (38-229)||(30716212-30716407)
chr5 (15-136)||(30480723-30480844)
chr5 (15-186)||(30204061-30204241)
chr5 (160-227)||(30480656-30480723)
chr5 (91-173)||(30397080-30397162)
chr5 (60-102)||(40660716-40660758)
chr5 (15-54)||(30245542-30245580)
chr5 (65-105)||(29848869-29848909)
chr5 (65-105)||(29868552-29868592)
[»] chr1 (1 HSPs)
chr1 (60-105)||(7584562-7584607)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 20302181 - 20302385
Alignment:
Q  15 tcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaat 114  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||||||          |||||||||    
T  20302181 tctttattaggaaggtgacattgtatttcatgattctagtcgagtcactcatgttatttcattatgtttgtatcagatatg----------ctgctgaat 20302270  T
Q  115 cccaaccatgtctgtgtcggacaatgttaattgatcaagttgtgtccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataa 214  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  20302271 cccaaccatgtttgtgtcggacaatattaattgatcaagttgtgtccactgcttttcctgaaagcaagaggatgcttcagctgaaccacagaaactataa 20302370  T
Q  215 gaggtgatgattttg 229  Q
    |||||||||||||||    
T  20302371 gaggtgatgattttg 20302385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 20300928 - 20300967
Alignment:
Q  15 tcttcattaggaaggtgtcattgtatttcatgattctagt 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  20300928 tcttcattaggaaggtgtcattgtatttcatgatgctagt 20300967  T

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Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 30746661 - 30746466
Alignment:
Q  38 tatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaatcccaaccatgtctgtgtcggaca 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||| |||||||||||    
T  30746661 tatttcatgattctagtcgagtcactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctgaatcacagccatgtttgtgtcggaca 30746562  T
Q  138 atgttaattgatcaa-----gttgtgtccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataagaggtgatgattttg 229  Q
    ||||| |||||||||     ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  30746561 atgtt-attgatcaagttgtgttgtgtccactgcttttcctgaaagcaagaggatgcttcagctgaaccacagaaactataaaaggtgatgattttg 30746466  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 30680034 - 30680229
Alignment:
Q  38 tatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaatcccaaccatgtctgtgtcggaca 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||| |||||||||||    
T  30680034 tatttcatgattctagtcgagtcactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctgaatcgcagccatgtttgtgtcggaca 30680133  T
Q  138 atgttaattgatcaa-----gttgtgtccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataagaggtgatgattttg 229  Q
    ||||| |||||||||     |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  30680134 atgtt-attgatcaagttgtgttgtgtccactgcttttgctgaaagcaagaggatacttcagctgaaccacagaaactataagaggtgatgattttg 30680229  T

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Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 30057193 - 30056998
Alignment:
Q  38 tatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaatcccaaccatgtctgtgtcggaca 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| || |||||| ||||||| |||    
T  30057193 tatttcatgattctagtcgagtcactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctaaatcgcagccatgtttgtgtcgaaca 30057094  T
Q  138 atgttaattgatcaa-----gttgtgtccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataagaggtgatgattttg 229  Q
    ||||| |||||||||     ||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  30057093 atgtt-attgatcaagttgtgttgtgtccactgtttttcctgaaagcaagaggatgcttcagctaaaccacagaaactataagaggtgatgattttg 30056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 30433365 - 30433200
Alignment:
Q  21 ttaggaaggtgtcattgtatttcatgatt-ctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaatcccaa 119  Q
    |||||| ||||||||||||||||||  || ||||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30433365 ttaggatggtgtcattgtatttcattttttctagtcgagacactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctgaatcccaa 30433266  T
Q  120 ccatgtctgtgtcggacaatgttaattgatcaagttgtgtccactgcttttccttaaagcaagagg 185  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  30433265 ccatgtttgtgttggacaatgttaattgatcaagttgtgtccactgcttctcctgaaagcaagagg 30433200  T

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Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 30716212 - 30716407
Alignment:
Q  38 tatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaatcccaaccatgtctgtgtcggaca 137  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |  || |||||| |||||||||||    
T  30716212 tatttcatgattctagtcgagtcactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctgacttgcagccatgtttgtgtcggaca 30716311  T
Q  138 atgttaattgatcaa-----gttgtgtccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataagaggtgatgattttg 229  Q
    || || ||| |||||     ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  30716312 at-tttatttatcaagttgtgttgtgtccactgcttttcctgaaagcaagaggatgcttcagctgaaccacagaatctataagaggtgatgattttg 30716407  T

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Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 30480844 - 30480723
Alignment:
Q  15 tcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgtggaatgctgctgaat 114  Q
    |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  30480844 tctttattaggaaggtgacattgtaattcatgattctagtcgagtcactcatgttatttcattatgtttgtgtcagatatgttgtggaatgctgctgaat 30480745  T
Q  115 cccaaccatgtctgtgtcggac 136  Q
    ||||||||| | ||||||||||    
T  30480744 cccaaccatatttgtgtcggac 30480723  T

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Target: chr5; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 30204241 - 30204061
Alignment:
Q  15 tcttcattaggaaggtgtcattgtatttcatgattctagtcgaatcactcatgttatttcattttgtttgtgacagatatgttgt---------ggaatg 105  Q
    ||||||||||||| ||||  || |||||||||||||||||||| || |||||||||||| ||| |||||||| ||||||||||||         ||||||    
T  30204241 tcttcattaggaatgtgtagttttatttcatgattctagtcgagtcgctcatgttattttattatgtttgtgtcagatatgttgtggaacgtccggaatg 30204142  T
Q  106 ctgctgaatcccaaccatgtctgtgtcggacaatgttaattgatcaagttgtgtccactgcttttccttaaagcaagagga 186  Q
    |||||||||||| || || | ||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  30204141 ctgctgaatcccgactatttttgtgtcaaacaatgttaattgatcaagttatgtccactgctttttctgaaagcaagagga 30204061  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 30480723 - 30480656
Alignment:
Q  160 ccactgcttttccttaaagcaagaggatgcttcagctgaactacagaaagtataagaggtgatgattt 227  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  30480723 ccactgcttttcctgaaagcaagaggatgcttcagctgaaccacagaaactataagaggtgataattt 30480656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 30397162 - 30397080
Alignment:
Q  91 atatgttgtggaatgctgctgaatcccaaccatgtctgtgtcggacaatgttaattgatcaagttgtgtccactgcttttcct 173  Q
    ||||||||||||||||||||||||||| ||   || |||||| ||||||||||||| | |||||||  |||||||||||||||    
T  30397162 atatgttgtggaatgctgctgaatcccgacttcgtttgtgtcagacaatgttaattaaccaagttgcatccactgcttttcct 30397080  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 40660758 - 40660716
Alignment:
Q  60 cactcatgttatttcattttgtttgtgacagatatgttgtgga 102  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  40660758 cactcatgttatttcattatgtttgtgtcagatatgttgtgga 40660716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 30245542 - 30245580
Alignment:
Q  15 tcttcattaggaaggtgtcattgtatttcatgattctagt 54  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  30245542 tcttcattaggaaggtgtcattgta-ttcatgattctagt 30245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 29848909 - 29848869
Alignment:
Q  65 atgttatttcattttgtttgtgacagatatgttgtggaatg 105  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  29848909 atgttatttcattatgtttgtgttagatatgttgtggaatg 29848869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 29868592 - 29868552
Alignment:
Q  65 atgttatttcattttgtttgtgacagatatgttgtggaatg 105  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  29868592 atgttatttcattatgtttgtgttagatatgttgtggaatg 29868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 7584562 - 7584607
Alignment:
Q  60 cactcatgttatttcattttgtttgtgacagatatgttgtggaatg 105  Q
    ||||| |||||||||||| || ||||| ||||||||||||||||||    
T  7584562 cactcgtgttatttcattatgcttgtgtcagatatgttgtggaatg 7584607  T

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