View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_229 (Length: 248)

Name: NF8810A_low_229
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_229
NF8810A_low_229
[»] chr7 (16 HSPs)
chr7 (14-245)||(39931060-39931292)
chr7 (44-245)||(36363991-36364192)
chr7 (86-245)||(4937592-4937751)
chr7 (86-243)||(234904-235061)
chr7 (86-243)||(17721152-17721309)
chr7 (86-245)||(29968491-29968650)
chr7 (89-243)||(31423122-31423276)
chr7 (86-243)||(47877500-47877656)
chr7 (86-245)||(11276712-11276871)
chr7 (89-219)||(37255278-37255408)
chr7 (100-245)||(25018782-25018927)
chr7 (108-227)||(17504041-17504160)
chr7 (108-227)||(17549054-17549173)
chr7 (119-245)||(17056079-17056205)
chr7 (120-173)||(6335940-6335993)
chr7 (100-180)||(11341327-11341407)
[»] chr5 (24 HSPs)
chr5 (73-245)||(33170162-33170334)
chr5 (86-245)||(30731778-30731937)
chr5 (86-245)||(42514237-42514396)
chr5 (86-227)||(28535157-28535298)
chr5 (86-243)||(42928648-42928805)
chr5 (86-245)||(27116637-27116796)
chr5 (86-243)||(31642028-31642185)
chr5 (86-243)||(8299648-8299805)
chr5 (86-243)||(35983257-35983414)
chr5 (94-242)||(27796009-27796157)
chr5 (86-245)||(23238900-23239059)
chr5 (100-245)||(41590627-41590772)
chr5 (108-243)||(10780740-10780875)
chr5 (100-245)||(4297773-4297918)
chr5 (86-134)||(27165525-27165573)
chr5 (100-183)||(36256309-36256392)
chr5 (119-245)||(476763-476889)
chr5 (86-164)||(12825716-12825794)
chr5 (139-184)||(25856964-25857009)
chr5 (139-219)||(27165455-27165535)
chr5 (94-180)||(15862206-15862292)
chr5 (72-134)||(22094825-22094887)
chr5 (94-180)||(42039234-42039320)
chr5 (86-134)||(25856999-25857047)
[»] scaffold1350 (1 HSPs)
scaffold1350 (83-243)||(58-218)
[»] chr3 (21 HSPs)
chr3 (73-245)||(962627-962799)
chr3 (86-245)||(2364794-2364953)
chr3 (86-243)||(34332281-34332438)
chr3 (86-245)||(10323035-10323194)
chr3 (89-219)||(19891197-19891327)
chr3 (89-243)||(48569505-48569659)
chr3 (86-245)||(3141368-3141527)
chr3 (100-245)||(52250589-52250733)
chr3 (86-245)||(19919693-19919852)
chr3 (92-243)||(12341721-12341872)
chr3 (86-245)||(16179464-16179623)
chr3 (83-219)||(20531541-20531677)
chr3 (121-245)||(48930278-48930402)
chr3 (119-245)||(6825372-6825498)
chr3 (100-183)||(8130482-8130565)
chr3 (100-245)||(25024308-25024453)
chr3 (121-240)||(40513193-40513312)
chr3 (139-245)||(44888474-44888580)
chr3 (208-245)||(10868242-10868279)
chr3 (208-245)||(21739987-21740024)
chr3 (208-244)||(15481223-15481259)
[»] scaffold0034 (1 HSPs)
scaffold0034 (86-245)||(105307-105466)
[»] chr8 (20 HSPs)
chr8 (86-245)||(7924903-7925062)
chr8 (86-245)||(8300320-8300479)
chr8 (86-243)||(41664834-41664991)
chr8 (86-245)||(172503-172662)
chr8 (86-243)||(9923118-9923275)
chr8 (89-243)||(25090907-25091061)
chr8 (89-242)||(13878954-13879107)
chr8 (69-168)||(38046858-38046957)
chr8 (86-243)||(20824816-20824973)
chr8 (100-245)||(36492912-36493057)
chr8 (139-245)||(12332418-12332524)
chr8 (32-134)||(43283248-43283350)
chr8 (139-184)||(43271007-43271052)
chr8 (100-183)||(4310368-4310451)
chr8 (90-240)||(37165590-37165740)
chr8 (89-219)||(42177045-42177172)
chr8 (156-243)||(32267141-32267228)
chr8 (208-245)||(24794385-24794422)
chr8 (140-240)||(8902398-8902498)
chr8 (197-245)||(18187774-18187822)
[»] chr4 (27 HSPs)
chr4 (86-245)||(23642055-23642214)
chr4 (86-245)||(47419321-47419480)
chr4 (89-243)||(55725172-55725326)
chr4 (86-245)||(23647713-23647872)
chr4 (86-243)||(1828006-1828163)
chr4 (86-243)||(19755784-19755941)
chr4 (86-243)||(19783865-19784022)
chr4 (89-243)||(11586664-11586818)
chr4 (89-243)||(48312614-48312768)
chr4 (86-243)||(15740737-15740894)
chr4 (86-241)||(46146194-46146349)
chr4 (87-245)||(5789556-5789714)
chr4 (89-243)||(54482625-54482779)
chr4 (100-183)||(19162703-19162786)
chr4 (86-133)||(19735311-19735358)
chr4 (90-183)||(36183058-36183151)
chr4 (94-134)||(23657822-23657862)
chr4 (209-244)||(13841794-13841829)
chr4 (100-183)||(40688597-40688680)
chr4 (100-214)||(7099013-7099127)
chr4 (194-244)||(19115061-19115111)
chr4 (121-225)||(38296258-38296362)
chr4 (208-245)||(42952969-42953006)
chr4 (208-245)||(51072157-51072194)
chr4 (152-240)||(7662777-7662865)
chr4 (94-134)||(8935599-8935639)
chr4 (120-172)||(54685161-54685213)
[»] chr1 (10 HSPs)
chr1 (86-244)||(6051120-6051278)
chr1 (139-245)||(35541604-35541710)
chr1 (86-243)||(47622543-47622700)
chr1 (119-245)||(22191246-22191372)
chr1 (208-244)||(26131910-26131946)
chr1 (121-240)||(13867302-13867421)
chr1 (206-245)||(45270878-45270917)
chr1 (208-245)||(20796296-20796333)
chr1 (152-244)||(32352775-32352867)
chr1 (140-240)||(33142682-33142782)
[»] chr2 (12 HSPs)
chr2 (90-243)||(14440265-14440418)
chr2 (86-243)||(28253237-28253394)
chr2 (32-219)||(37445556-37445743)
chr2 (89-243)||(33515673-33515827)
chr2 (100-245)||(26146746-26146891)
chr2 (100-245)||(43310790-43310935)
chr2 (139-227)||(12646091-12646179)
chr2 (100-183)||(13416202-13416285)
chr2 (89-134)||(12646056-12646101)
chr2 (72-134)||(15018180-15018242)
chr2 (208-245)||(11233954-11233991)
chr2 (200-245)||(30504775-30504820)
[»] scaffold0472 (1 HSPs)
scaffold0472 (86-245)||(3769-3928)
[»] chr6 (27 HSPs)
chr6 (86-243)||(2554123-2554280)
chr6 (89-227)||(14372473-14372611)
chr6 (86-243)||(13938236-13938392)
chr6 (87-245)||(18682038-18682196)
chr6 (86-243)||(17605800-17605957)
chr6 (83-156)||(10922067-10922140)
chr6 (140-243)||(24766880-24766983)
chr6 (89-243)||(10576716-10576870)
chr6 (92-243)||(17577184-17577335)
chr6 (32-119)||(5041980-5042066)
chr6 (139-243)||(21629588-21629692)
chr6 (139-240)||(15956461-15956561)
chr6 (122-231)||(18588902-18589011)
chr6 (94-134)||(5085601-5085641)
chr6 (100-172)||(15602855-15602927)
chr6 (206-245)||(34434897-34434936)
chr6 (90-180)||(26514245-26514335)
chr6 (126-231)||(7956149-7956254)
chr6 (73-134)||(24767004-24767065)
chr6 (87-180)||(32186201-32186294)
chr6 (94-134)||(503107-503147)
chr6 (197-245)||(1104411-1104459)
chr6 (94-134)||(8264748-8264788)
chr6 (208-244)||(13086178-13086214)
chr6 (208-240)||(14552041-14552073)
chr6 (145-245)||(14843601-14843701)
chr6 (208-240)||(19616348-19616380)
[»] scaffold0016 (1 HSPs)
scaffold0016 (139-245)||(28344-28450)
[»] scaffold0131 (1 HSPs)
scaffold0131 (152-244)||(4021-4113)
[»] scaffold0043 (1 HSPs)
scaffold0043 (145-245)||(34073-34173)
[»] scaffold0029 (1 HSPs)
scaffold0029 (152-244)||(134319-134411)
[»] scaffold0002 (2 HSPs)
scaffold0002 (152-244)||(312146-312238)
scaffold0002 (152-244)||(327600-327692)
[»] scaffold0026 (1 HSPs)
scaffold0026 (95-180)||(67606-67691)
[»] scaffold0418 (1 HSPs)
scaffold0418 (152-240)||(8187-8275)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 39931292 - 39931060
Alignment:
Q  14 tggacatcacaccaaaaagacacacacgacgcaaaccacccatcactcc-taccttcaaccccatcccggattctcactatctcccaccaccaacaagaa 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39931292 tggacatcataccaaaaagacacacacgacacaaaccacccatcactccctaccttcaaccccatcccgaattctcactatctcccaccaccaacaagaa 39931193  T
Q  113 caacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaac 212  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39931192 caactccggcccccatcctccaaccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaac 39931093  T
Q  213 accatttacctaacagagcaatattaaactccc 245  Q
    ||||||||||||||||||||||||||| |||||    
T  39931092 accatttacctaacagagcaatattaagctccc 39931060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 36363991 - 36364192
Alignment:
Q  44 gcaaaccacccatcactcctaccttcaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccat 143  Q
    ||||||||||||||||  |||||| | |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |     ||    
T  36363991 gcaaaccacccatcaccactacctcctaccccatcccggattctcactatctccctccatcaagaagaacaacttcggccctcatcctccaactatttat 36364090  T
Q  144 cctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |||||||||| || ||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  36364091 cctccacaccttaactagccaccaacaccctacgccccaaaccattaccctccactaacaaacgccaacaccatttactcaacaaagcaatattaaactc 36364190  T
Q  244 cc 245  Q
    ||    
T  36364191 cc 36364192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 4937751 - 4937592
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  4937751 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 4937652  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  4937651 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 4937592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 235061 - 234904
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  235061 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacctttcgccacaaag 234962  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| | ||||||||||||||| |||| |||||||||||||||    
T  234961 cttctctctccaataacaaccaccaacaccatttacccaacaaagcaatattaaactc 234904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 17721152 - 17721309
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||||||||||| | | |||||||     
T  17721152 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacctttctccacaaag 17721251  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | ||   ||||| |||||| ||||||||||||||||| |||| ||| | |||||||||    
T  17721252 cttccttctccaataacaaccgccaacaccatttacccaacaaagctaaattaaactc 17721309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 29968491 - 29968650
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  | |||||||| |||||| |||||||||  |  |||||| |||| |||||||||||||| |||||| | | |||||||     
T  29968491 ctcactatctccctccaccacgacgaacaactccggcccgcatcctccaaacctccatccgccacgccatacctagccactaacacctttctccacaaag 29968590  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    | || | ||||| |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  29968591 cttccctctccaataacaaccgccaacaccatttacccaacaaagcaatattaaactccc 29968650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 31423122 - 31423276
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| | ||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||| |||||||||||||||||||| ||||||| |||    
T  31423122 actatctccctcaaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatgcctagccaccaacaccctacgccacaaaccat 31423221  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| |||||||||||||| || |||| |||| | ||||||||    
T  31423222 ccctatcaactaacaaccgccaacaccatttccccaacaaagcactgttaaactc 31423276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 47877500 - 47877656
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||| ||||||||  |  |||||| ||||||||||||||||||||||||||   | |||||||     
T  47877500 ctcactatctccctccaccacgaagaacaactccggcccc-atcctccaaacctccatccgccacaccatacctagccaccaacacctgtcgccacaaag 47877598  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| ||||||||||||||| | |||| |||||||||||||||    
T  47877599 cttccctctccaataacaaccgccaacaccatttatccaacaaagcaatattaaactc 47877656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 11276871 - 11276712
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  | |||||||| ||| ||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  11276871 ctcactatctccctccaccacgacgaacaactccgggccccatcctccaaacctccatccgccacaccatacctagccactaacacctttctccacaaag 11276772  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    | || | ||||| |||||| ||||||||||||||||| | || |||||| ||||||||||    
T  11276771 cttccctctccaataacaaccgccaacaccatttacccaccaaagcaatgttaaactccc 11276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 37255278 - 37255408
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||| ||  | |||||||| | ||||||||||||||  |  |||||| |||||||||||||||||||||||||||||| || |||| |||    
T  37255278 actatctccctccatcacgatgaacaactccagcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccccaaaccat 37255377  T
Q  189 caccctccactaacaaacgccaacaccattt 219  Q
    | |  || |||||||| |||||||| |||||    
T  37255378 ccctatcaactaacaaccgccaacatcattt 37255408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 25018927 - 25018782
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| |||||| |||||| |||||| |||||| || |||| ||||| ||||||| || ||||||||||||||| |||| ||   |   | || |||     
T  25018927 ccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctataccataagctactcctcttcacc 25018828  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    || ||||||||||||||||| | |||||  |||| |||||||||||    
T  25018827 aataaacgccaacaccattttcttaacaacgcaacattaaactccc 25018782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 17504160 - 17504041
Alignment:
Q  108 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacg 207  Q
    |||||| ||| |||||||||||||||| || |||||||||| |||| || || ||||||||||| | | |||| | | |||| |  || ||||||| | |    
T  17504160 aagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacactcgataccaaagaccatctctatcaactaacatatg 17504061  T
Q  208 ccaacaccatttacctaaca 227  Q
    ||||||||| ||||||||||    
T  17504060 ccaacaccacttacctaaca 17504041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 17549054 - 17549173
Alignment:
Q  108 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacg 207  Q
    |||||| ||| |||||||||||||||| || |||||||||| |||| || || ||||||||||| | | |||| | | |||| |  || ||||||| | |    
T  17549054 aagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacactcgataccaaagaccatctctatcaactaacatatg 17549153  T
Q  208 ccaacaccatttacctaaca 227  Q
    ||||||||| ||||||||||    
T  17549154 ccaacaccacttacctaaca 17549173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 17056079 - 17056205
Alignment:
Q  119 cggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatt 218  Q
    ||||||||| || ||| || |||||||||| ||||||| |  ||||||||||||||| |||||| |  | |    || ||||| || | |||||||||||    
T  17056079 cggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccacatactacccttatcaactaataacctccaacaccatt 17056178  T
Q  219 tacctaacagagcaatattaaactccc 245  Q
    |||||||||||| || |||||||||||    
T  17056179 tacctaacagagaaacattaaactccc 17056205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 6335993 - 6335940
Alignment:
Q  120 ggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccc 173  Q
    ||||||||||||||| || ||||||   ||||||||||||||| ||||||||||    
T  6335993 ggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacaccc 6335940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 11341327 - 11341407
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    ||||||| | |||||||| ||||||||  |||||| || |||  ||||| |||||||||||||  ||||||||||| ||||    
T  11341327 ccaccaaaaggaacaactccggcccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctatacca 11341407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 33170162 - 33170334
Alignment:
Q  73 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 172  Q
    ||||||||  || ||||||||||||| ||||||| | |||||||| ||||||||||||||||  |  |||||| || |||||||||||||||| ||||||    
T  33170162 cccatccctaatcctcactatctcccgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacacc 33170261  T
Q  173 ctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| ||||||  |||| | ||| |||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  33170262 ctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccc 33170334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 30731937 - 30731778
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| || |||   | |||||||     
T  30731937 ctcacaatctccctccaccatgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaatacctgtctccacaaag 30731838  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  30731837 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 30731778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 42514237 - 42514396
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  42514237 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaactgccatcctccacaccatacctagccactaacacctttctccacaaag 42514336  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||| | |||||| | ||||||| ||||||| |||| |||||| ||||||||||    
T  42514337 catccctctctaataacaacctccaacacaatttacccaacaaagcaatgttaaactccc 42514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 28535298 - 28535157
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||||||||||| | | |||||||     
T  28535298 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacctttctccacaaag 28535199  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaaca 227  Q
    | ||   ||||| |||||| ||||||||||||||||| ||||    
T  28535198 cttccttctccaataacaaccgccaacaccatttacccaaca 28535157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 42928648 - 42928805
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    |||||||||| || ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||| |||||||||||||||||||||||||||| |||     
T  42928648 ctcactatctgcctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacatcatacctagccaccaacaccctacaccataaag 42928747  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || |  || | |||||| ||||||||||| || || |||| |||||||||||||||    
T  42928748 cttccctatctattaacaatcgccaacaccactttcccaacaaagcaatattaaactc 42928805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 27116796 - 27116637
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| |||||||||||||| |||||| | | ||||||      
T  27116796 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacgccatacctagccactaacacctttctccacaacg 27116697  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    ||||   ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  27116696 catcctgctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 27116637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 31642028 - 31642185
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||| ||||||||||||||| | | |||||||     
T  31642028 ctcactatctcccgccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatatctagccaccaacacctttctccacaaag 31642127  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | ||   ||||| |||||| ||||||||||||||| | |||| ||| | |||||||||    
T  31642128 cttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactc 31642185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 8299805 - 8299648
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| ||||||||||| |||||||     
T  8299805 ctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccctactccacaaac 8299706  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |  | |  || |||||||  | |||||||||||| || |||| |||||| ||||||||    
T  8299705 ctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactc 8299648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 35983414 - 35983257
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| || ||||||||||||||||||||||| | | |||||||     
T  35983414 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgcctcaccatacctagccaccaacacctttctccacaaag 35983315  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | ||   ||||| |||||| ||||||||||||||| | |||| ||| | |||||||||    
T  35983314 cttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactc 35983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 27796009 - 27796157
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccc 193  Q
    ||||| ||||||  ||||||||||  |||||||||||||||  |  |||||| |||||||||||||||||||||||||||||| ||| ||  | || |      
T  27796009 ctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccataacccctctcta 27796108  T
Q  194 tccactaacaaacgccaacaccatttacctaacagagcaatattaaact 242  Q
    || |||||||| |||||||||||||| |||| || |||||| |||||||    
T  27796109 tcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaact 27796157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 23238900 - 23239059
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  | |||||||| ||||||||| ||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  23238900 ctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgccacaccatacctagccactaacacctttctccacaaag 23238999  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
      || | ||||| |||||| || |||||||||||||| |||| |||||| || |||||||    
T  23239000 attccctctccaataacaaccgtcaacaccatttacccaacaaagcaatgttgaactccc 23239059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 41590627 - 41590772
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| ||||||  || ||||||||| || ||| || |||||||||| |||||||||| ||||||||||||||| |||| |||  |   | ||| ||     
T  41590627 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaagtactcctctcaacc 41590726  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |  |||| |||||||||||    
T  41590727 aacaaacgccaacaccatttgcctaataacgcaacattaaactccc 41590772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 10780740 - 10780875
Alignment:
Q  108 aagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacg 207  Q
    |||| ||||| ||||||||||||||||  |  |||||| |||| ||||||||||||| ||||||||||| ||||||| |  | |  || |||||||  ||    
T  10780740 aagagcaactccggcccccatcctccaaaccaccatccgccactccatacctagccaacaacaccctactccacaaacctcccctatcaactaacagccg 10780839  T
Q  208 ccaacaccatttacctaacagagcaatattaaactc 243  Q
    |||||||||||| || |||| |||||| ||||||||    
T  10780840 ccaacaccatttccccaacaaagcaatgttaaactc 10780875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 4297918 - 4297773
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| ||||||  || ||| ||||| || ||| || |||||||||| |||||||||| ||||||||||||||| |||| |||  |   | ||| ||     
T  4297918 ccaccaagaagaacctctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaactactcctctcaacc 4297819  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||| ||||||||||||| ||||| |  |||| |||||||||||    
T  4297818 aacaaatgccaacaccatttgcctaataacgcaacattaaactccc 4297773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 27165573 - 27165525
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  27165573 ctcattatctccctccaccaagaagaacaacttcggcccccatcctcca 27165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 36256309 - 36256392
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   |||||||| ||| | |||||||||||| |||||||    
T  36256309 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaacaaccaacaccctataccacaa 36256392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 476763 - 476889
Alignment:
Q  119 cggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatt 218  Q
    ||||||||  |||||| || |||  ||||| ||||||| || || |||| ||||||| |||| ||| |||| |  || || ||||  |||||||||||||    
T  476763 cggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccatt 476862  T
Q  219 tacctaacagagcaatattaaactccc 245  Q
    ||||||||| |||| ||||||||||||    
T  476863 tacctaacaaagcactattaaactccc 476889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 12825716 - 12825794
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagcca 164  Q
    ||||| ||||||| ||||||  ||||||||||  | |||||||||||||  |  |||||||||||||||||||||||||    
T  12825716 ctcacaatctccctccaccacgaagaacaactctgacccccatcctccaaactgccatcctccacaccatacctagcca 12825794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 25857009 - 25856964
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaa 184  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||    
T  25857009 cccatcctccacgccatacctagccaacaacaccctactccacaaa 25856964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 27165535 - 27165455
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccattt 219  Q
    ||||||||||||| |||||||||||||||||||| ||| | ||||  | || |  || |||||||| ||||||||||||||    
T  27165535 cccatcctccacaacatacctagccaccaacaccttacgcaacaacccttccctatctactaacaaccgccaacaccattt 27165455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 15862292 - 15862206
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    ||||| ||||||| | |||||||| |  |||||| |||||| ||||||| ||||  ||||||||||||| | |||||||||| ||||    
T  15862292 ctccctccaccaatacgaacaactccatcccccaacctccaaccgcccagcctcttcaccatacctagcaatcaacaccctatacca 15862206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 22094887 - 22094825
Alignment:
Q  72 ccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    |||||||||  |||||| | | ||||| ||||||  |||||||||||||||||||||||||||    
T  22094887 ccccatccctaattctccccacctcccgccaccacgaagaacaacttcggcccccatcctcca 22094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 42039320 - 42039234
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    ||||| ||||||| || ||  ||| |||||||||||||||| ||||||| || || |||||||  | ||||||||||||||| ||||    
T  42039320 ctccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaacaccctatacca 42039234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 25857047 - 25856999
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||    
T  25857047 ctcacaatctccctccaccacaaagaacaactccggcccccatcctcca 25856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 243
Target Start/End: Original strand, 58 - 218
Alignment:
Q  83 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccaca 182  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||||||||||  |  ||||||||||||||||||||| ||||||||||| ||| |||||    
T  58 attctgactatctccctccaccaagaagagcaacttcggcccccatcctccaaaccaccatcctccacaccatacctaaccaccaacaccttacgccaca 157  T
Q  183 aatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |  |||| |  || |||||||| | |||||||||||| ||||||| |||||| ||||||||    
T  158 atccatctctatctactaacaacctccaacaccatttccctaacaaagcaatgttaaactc 218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 962799 - 962627
Alignment:
Q  73 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 172  Q
    ||||||||  || ||||||||||||| ||||||| | |||||||| || |||||||||||||  |  |||||| || |||||||||||||||| ||||||    
T  962799 cccatccctaatcctcactatctccctccaccaagatgaacaactccgacccccatcctccaaaccaccatccgccccaccatacctagccactaacacc 962700  T
Q  173 ctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| ||||||  |||| | ||| |||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  962699 ctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccc 962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 2364794 - 2364953
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  2364794 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 2364893  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  2364894 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 2364953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 34332438 - 34332281
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| | ||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  34332438 ctcactatctccctccaccacgaagaacaactcccgcccccatcctccaaacctccatccgccacaccatacctagccactaacacctttctccacaaag 34332339  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| ||||||||||||||||| |||| |||||| ||||||||    
T  34332338 cctccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactc 34332281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 10323194 - 10323035
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  ||||| |||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  10323194 ctcacaatctccctccaccacgaagaataactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 10323095  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | |||||  ||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  10323094 catccctctccaacaacaacctccaacaccatttacccaacaaagcaatgttaaactccc 10323035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 19891197 - 19891327
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||| ||||||| ||     
T  19891197 actatctccctccaccacgaagaacaacttcggcccccatcctccaaaccaccatctgccacaccatacctagccaccaacaccctacgccacaaaccaa 19891296  T
Q  189 caccctccactaacaaacgccaacaccattt 219  Q
    | |  || |||||||| ||||||||||||||    
T  19891297 ccctatcaactaacaatcgccaacaccattt 19891327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 48569659 - 48569505
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| | ||||  ||||||| |||||||||||||||||||  |  |||||| |||||||||||||||||||||||||||||| ||||||  |||    
T  48569659 actatctccctctaccacgaagaacagcttcggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaacccat 48569560  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| ||||||||||||||  ||| || |||||| ||||||||    
T  48569559 ctctatcaactaacaaccgccaacaccatttctctagcaaagcaatgttaaactc 48569505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 3141368 - 3141527
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||| | |||||| | ||||||||||||||||     |||||| || |||||||||||||||| |||||||||| ||||||      
T  3141368 ctcactatctcccgccaccaagatgaacaattccggcccccatcctccaaatcaccatccgccgcaccatacctagccactaacaccctacgccacaacc 3141467  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||| |||||||| | |||||||||||| ||||||| |||| | ||||||||||    
T  3141468 catctctctctactaacaacctccaacaccattttcctaacaaagcagtgttaaactccc 3141527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 52250733 - 52250589
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| |||||| ||| ||||||||| |||||| || |||||||||| ||||||| || ||||||||||||||| |||| ||| |  | | ||||||     
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctataccataaa-ctaccctctccacc 52250635  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||    
T  52250634 aacaaacgccaacaccatttccctaacaacgcaacattaaactccc 52250589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 19919852 - 19919693
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |   ||||||||||||||||||||||||| ||||||   | |||||||     
T  19919852 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgtcatcctccacaccatacctagccactaacacctgtctccacaaag 19919753  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | |||||||||||| || ||||  ||||| ||||||||||    
T  19919752 catccctctccaataacaacctccaacaccatttgcccaacaaggcaatgttaaactccc 19919693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 12341872 - 12341721
Alignment:
Q  92 atctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcac 191  Q
    ||||||| ||||||  |||| ||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| ||||||||||| ||||||| |  | |    
T  12341872 atctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccctactccacaaacctcccc 12341773  T
Q  192 cctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
      || |||||||  |||||||||||||| || |||| |||||| ||||||||    
T  12341772 tatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactc 12341721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 16179464 - 16179623
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||| |||||||||| ||||||||||||||||  |  ||| | || ||||||||||| ||||| |||||| ||| ||||||      
T  16179464 ctcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccgtctacaccatacctcgccactaacaccttacgccacaacc 16179563  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    | |||| ||| |||||||| | |||||||||||| || |||| ||| | |||||||||||    
T  16179564 cttcactctctactaacaacctccaacaccatttccccaacaaagcgacattaaactccc 16179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 20531677 - 20531541
Alignment:
Q  83 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccaca 182  Q
    |||||||||||||||| ||||||| ||||| |||| |  |||||||| ||||  |  ||||||||| || |||||||||| ||||||||| ||| |||||    
T  20531677 attctcactatctccctccaccaagaagaataactccaacccccatcttccaaacctccatcctccgcagcatacctagctaccaacaccttacgccaca 20531578  T
Q  183 aatcatcaccctccactaacaaacgccaacaccattt 219  Q
    || | || |  || | |||||||||||||||||||||    
T  20531577 aaccttccctatcaattaacaaacgccaacaccattt 20531541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 48930278 - 48930402
Alignment:
Q  121 gcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccattta 220  Q
    ||||||| |||||| || |||||||||| ||||||| || |||||||| |||||| |||| |||  ||  | ||| || ||||  |||||||||||||||    
T  48930278 gcccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaactattcctctctaccaacagccgccaacaccattta 48930377  T
Q  221 cctaacagagcaatattaaactccc 245  Q
    |||||||  ||||||||||||||||    
T  48930378 cctaacaatgcaatattaaactccc 48930402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 6825372 - 6825498
Alignment:
Q  119 cggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatt 218  Q
    ||||||||| || ||| || |||||||||| |||||||||  ||||||||||||||| |||| |||  |   | ||| || |||||||||||||||||||    
T  6825372 cggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaactactcctctcaaccaacaaacgccaacaccatt 6825471  T
Q  219 tacctaacagagcaatattaaactccc 245  Q
    | ||||| |  ||||||||||||||||    
T  6825472 tgcctaataacgcaatattaaactccc 6825498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 8130482 - 8130565
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||| |||||| ||| ||||||||| |||||| || ||||||   ||||||||||||||| |||||||||||| |||||||    
T  8130482 ccaccaaaaagaaccactccggcccccaacctccaacctcccatcacgcacaccatacctagcaaccaacaccctataccacaa 8130565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 25024453 - 25024308
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| |||||||||| || |||||| || ||| || |||  ||||| ||||||| |||||  ||||||||||| |||| ||| |||| |  ||||||    
T  25024453 ccaccaataagaacaactccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaacaccctataccaaaaaccatctctatccact 25024354  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    ||||  | |||||||||||| ||| | ||||  | |||||||||||    
T  25024353 aacatcctccaacaccattttccttaaagagataaattaaactccc 25024308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 40513312 - 40513193
Alignment:
Q  121 gcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccattta 220  Q
    ||||||| |||||| ||||||| ||  | ||||||||| ||| ||||  |||||| |||| ||| || | |  ||||| ||||  |||||||||||||||    
T  40513312 gcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccaccaacatccgccaacaccattta 40513213  T
Q  221 cctaacagagcaatattaaa 240  Q
    ||||||| |||| |||||||    
T  40513212 cctaacaaagcactattaaa 40513193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 44888474 - 44888580
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatatta 238  Q
    |||||||||| ||||||| |  ||||||||||||||| |||||| |  | |    || ||||| || | ||||||||||||||||||||||| || ||||    
T  44888474 cccatcctcctcaccataacgcgccaccaacaccctataccacatactacccttatcaactaataacctccaacaccatttacctaacagagaaacatta 44888573  T
Q  239 aactccc 245  Q
    |||||||    
T  44888574 aactccc 44888580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 10868242 - 10868279
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  10868242 ccaacaccatttacctaacaaagcaaaattaaactccc 10868279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 21740024 - 21739987
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  21740024 ccaacaccatttacctaacaaagcaaaattaaactccc 21739987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 15481259 - 15481223
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||||||||||||| | ||||||||||||||||    
T  15481259 ccaacaccatttacctaataaagcaatattaaactcc 15481223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 105466 - 105307
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  105466 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 105367  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  105366 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 105307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 7924903 - 7925062
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  7924903 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 7925002  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  7925003 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 7925062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 8300320 - 8300479
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  8300320 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 8300419  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  8300420 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 8300479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 41664991 - 41664834
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||  ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  41664991 ctcactatctccatccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacaccttcctccacaaag 41664892  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| ||||||||||||||||| |||| |||||| ||||||||    
T  41664891 cctccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactc 41664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 172662 - 172503
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | ||||||      
T  172662 ctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaacg 172563  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||| ||||||||||| |||| |||||| ||||||||||    
T  172562 catccctctccaataacaacctccagcaccatttacccaacaaagcaatgttaaactccc 172503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 9923118 - 9923275
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||||||||||| | | |||||||     
T  9923118 ctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacctttctccacaaag 9923217  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | ||   ||||| |||||| ||||||||||||||| | |||| ||| | |||||||||    
T  9923218 cttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactc 9923275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 25090907 - 25091061
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  ||||||| || ||||||||||||||||  |  |||||| ||||||||||| |||||||||||||||||| ||||||  | |    
T  25090907 actatctccctccaccacgaagaacagctccggcccccatcctccaaaccaccatccgccacaccatacatagccaccaacaccctacgccacaacccct 25091006  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| ||| |||||||||| ||||||| |||||| ||||||||    
T  25091007 ctctatcaactaacaaccgctaacaccatttccctaacaaagcaatgttaaactc 25091061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 13879107 - 13878954
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  ||||||||||  |||||||||||||||  |  |||||| |||||||||||||||||||||||||||||| ||| ||  | |    
T  13879107 actatctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccataacccct 13879008  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaact 242  Q
    | |  || |||||||| |||||||||||||| |||| || |||||| |||||||    
T  13879007 ctctatcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaact 13878954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 38046858 - 38046957
Alignment:
Q  69 caaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaa 168  Q
    |||| ||| |||| ||||| |||||||||| ||| ||  ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||    
T  38046858 caacaccaccccgaattctaactatctccctccatcacgaagaacaacttcggcccccatcctccaacctcccatcctccacaccatacctagcaaccaa 38046957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 20824816 - 20824973
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| ||||||||||| |||||||     
T  20824816 ctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccctactccacaaac 20824915  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |  | |  || |||||||  | |||||||||||| || |||| |||||| ||||||||    
T  20824916 ctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactc 20824973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 36492912 - 36493057
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| ||||||  || ||||||||| || ||| || |||||||||| |||||||||| ||||||||||||||| |||| |||  |   | ||| ||     
T  36492912 ccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaactactcctctcaacc 36493011  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |  |||| |||||||||||    
T  36493012 aacaaacgccaacaccatttgcctaataacgcaacattaaactccc 36493057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 12332418 - 12332524
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcacc-ctccactaacaaacgccaacaccatttacctaacagagcaatatt 237  Q
    |||||||||| ||||||| || ||||||||||||||| |||| | |  | |||| ||||||||| ||||||||||||||||| |||||||  ||||||||    
T  12332418 cccatcctcctcaccatatctcgccaccaacaccctataccaaagacta-cacctctccactaataaacgccaacaccatttgcctaacaacgcaatatt 12332516  T
Q  238 aaactccc 245  Q
    ||||||||    
T  12332517 aaactccc 12332524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 43283350 - 43283248
Alignment:
Q  32 gacacacacgacgcaaaccacccatcactcctaccttcaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcct 131  Q
    ||||||||||| |||||||||| ||||   ||| |  ||||| ||||||  |||||||||||||||| |||||||||||||||||| ||||  |||||||    
T  43283350 gacacacacgaagcaaaccacctatcataactaacaccaacctcatcccaaattctcactatctccctccaccaacaagaacaactccggcttccatcct 43283251  T
Q  132 cca 134  Q
    |||    
T  43283250 cca 43283248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 43271007 - 43271052
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaa 184  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  43271007 cccatccgccacaccatacctagccatcaacaccctacaccacaaa 43271052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 4310451 - 4310368
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   ||| |||| ||||| |||||||||||| |||||||    
T  4310451 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacatcatatctagcaaccaacaccctataccacaa 4310368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 37165740 - 37165590
Alignment:
Q  90 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatc 189  Q
    ||||||||| |||||||  ||||  ||| ||||||||| |||||| ||||||||||||| | ||||| || |||||||  |||||| |||||||  |  |    
T  37165740 ctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctataccacaagcctcc 37165641  T
Q  190 accctccactaacaaacgccaacaccatttacctaacagagcaatattaaa 240  Q
     |  ||||||||||  | |||||| || || ||||| ||||||||||||||    
T  37165640 tctatccactaacatcctccaacatcactttcctaatagagcaatattaaa 37165590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 42177172 - 42177045
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  ||||||||||||||||| |||||||||  |  |||||  ||  |   |||||||||||||||||||||| ||||||| |||    
T  42177172 actatctccctccaccacgaagaacaacttcggcccgcatcctccaaaccaccatctgcctga---tacctagccaccaacaccctacgccacaaaccat 42177076  T
Q  189 caccctccactaacaaacgccaacaccattt 219  Q
    | |  || |||||||| || ||||| |||||    
T  42177075 ccctatcaactaacaaccgtcaacatcattt 42177045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 32267141 - 32267228
Alignment:
Q  156 acctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |||||||||| |||||| | | ||||||| | || | ||||| |||||| ||||||||||||||||| |||| ||| || ||||||||    
T  32267141 acctagccactaacacctttctccacaaagcttccctctccaataacaaccgccaacaccatttacccaacaaagctatgttaaactc 32267228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 24794385 - 24794422
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  24794385 ccaacaccatttacctaacaaagcaaaattaaactccc 24794422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 8902398 - 8902498
Alignment:
Q  140 ccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaa 239  Q
    ||||||||| ||||||| | |||||| ||||||||| |||||||  || | |  || |||||||  |||||||||||||| ||||| ||||| | |||||    
T  8902398 ccatcctcctcaccataacgagccactaacaccctataccacaagccagctctatcaactaacatccgccaacaccattttcctaagagagccagattaa 8902497  T
Q  240 a 240  Q
    |    
T  8902498 a 8902498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 18187774 - 18187822
Alignment:
Q  197 actaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||| | |||||||||||||||||||| |||| | ||||||||||    
T  18187774 actaacaatctccaacaccatttacctaacaaagcagtgttaaactccc 18187822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 23642214 - 23642055
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  23642214 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 23642115  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| ||||||||||    
T  23642114 catccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccc 23642055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 47419321 - 47419480
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  47419321 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 47419420  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | |||||  ||||| | |||||||||||||||||||| |||||| ||||||||||    
T  47419421 catccctctccaacaacaacctccaacaccatttacctaacaaagcaatgttaaactccc 47419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 55725326 - 55725172
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||| |||| ||  |||    
T  55725326 actatctccctccaccaagaagaacaactccggcccccatcctccaaaccaccatcctccacaccatacctagccaccaacaccctataccataatccat 55725227  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| | |||||||||||| ||||||| |||||  ||||||||    
T  55725226 ctctatctactaacaacctccaacaccatttccctaacaaagcaaagttaaactc 55725172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 23647872 - 23647713
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  23647872 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 23647773  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| | ||||||||||||| | |||| |||||| ||||||||||    
T  23647772 catccctctccaataacaacctccaacaccatttatccaacaaagcaatgttaaactccc 23647713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 1828163 - 1828006
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||| |||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  1828163 ctcactatctcccgccaccaagaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccactaacaccttcctccacaaaa 1828064  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    ||||   ||||| |||||| ||||||||||||||| | |||| || ||| ||||||||    
T  1828063 catccttctccaataacaaccgccaacaccatttatccaacaaagaaatgttaaactc 1828006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 19755784 - 19755941
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  19755784 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacaccttcctccacaaag 19755883  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| ||||||||||||||| | |||| |||||| ||||||||    
T  19755884 cttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactc 19755941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 19784022 - 19783865
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  19784022 ctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacaccttcctccacaaag 19783923  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| |||||| ||||||||||||||| | |||| |||||| ||||||||    
T  19783922 cttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactc 19783865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 11586818 - 11586664
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||  |  |||||| ||||||||||||||||||| |||||| ||||||||||  | |    
T  11586818 actatctccctccaccaagaagaacaacttcggcccccattctccaaacctccatccgccacaccatacctagccactaacaccttacaccacaaccctt 11586719  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |    || |||||||| |||||||||||||| |||||||| ||| || |||||||    
T  11586718 ccttatcaactaacaaccgccaacaccattttcctaacagggcagtaataaactc 11586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 48312614 - 48312768
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||||||||||||||| ||||||  | |    
T  48312614 actatctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaacccct 48312713  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| ||| |||||||||| |||| || |||||| ||||||||    
T  48312714 ctctatcaactaacaaccgctaacaccatttccctagcaaagcaatgttaaactc 48312768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 15740737 - 15740894
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  |||||||||| |||||||||||| |||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  15740737 ctcactatctcccgccaccatgaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccactaacacctttctccacaaaa 15740836  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | ||   ||||| |||||| ||  ||||||||||||| |||| |||||| ||||||||    
T  15740837 cttccttctccaataacaaccgtaaacaccatttacccaacaaagcaatgttaaactc 15740894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 46146194 - 46146349
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||| | |||||||| |||||||||| |||||  |  |||||| |  ||||||| ||||||||||||||||||| ||||||      
T  46146194 ctcactatctcccgccaccaagatgaacaactccggcccccattctccaaaccaccatccgctgcaccatatctagccaccaacaccctacgccacaacc 46146293  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaac 241  Q
    |||| | ||| |||||||| |  ||||||||||| ||||||| |||||| ||||||    
T  46146294 catctctctctactaacaaccttcaacaccattttcctaacaaagcaatgttaaac 46146349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 5789714 - 5789556
Alignment:
Q  87 tcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatc 186  Q
    |||| ||||||| ||||||| |||||||||| ||||||||||||||||  |  ||| |||||||||||||||||||||| |||||| ||| ||||||  |    
T  5789714 tcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccctccacaccatacctagccactaacaccttacgccacaaccc 5789615  T
Q  187 atcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
     |||| ||| |||||||| | ||||||||| || || |||| ||  | |||||||||||    
T  5789614 ttcactctctactaacaacctccaacaccactttcccaacaaagtgacattaaactccc 5789556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 54482779 - 54482625
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  |||||||||| || |||||||||||||  |  |||||  |||||||||||||||||||||||||||||| ||| ||  | |    
T  54482779 actatctccctccaccacgaagaacaactccgacccccatcctccaaaccaccatctgccacaccatacctagccaccaacaccctacgccataacccct 54482680  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| |||||||||||||| |||| || |||||| ||||||||    
T  54482679 ctctatcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaactc 54482625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 19162786 - 19162703
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||| |||||| ||| |||||||||||||||| || ||| |||   |||||||| ||||| |||||||||||| |||||||    
T  19162786 ccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagcaaccaacaccctataccacaa 19162703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 19735358 - 19735311
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctcc 133  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  19735358 ctcactatctcccgccaccaagaagaacaactccggcccccatcctcc 19735311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 36183058 - 36183151
Alignment:
Q  90 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||||| |||||||  ||||  ||| ||||||||| |||||| ||||||||||||| ||||||| || ||||| |  |||||| |||||||    
T  36183058 ctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccacaagtaccctataccacaa 36183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 23657822 - 23657862
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  23657822 ctcccgccaccaagaagaacaacttcggcccccatcctcca 23657862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 13841794 - 13841829
Alignment:
Q  209 caacaccatttacctaacagagcaatattaaactcc 244  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13841794 caacaccatttacctaaaagagcaatattaaactcc 13841829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 40688597 - 40688680
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    ||||||| |||||| ||| |||||||||||||||| || |||||||   |||||||| ||| | |||||||||| | |||||||    
T  40688597 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacccgataccacaa 40688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 7099013 - 7099127
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    |||||||  ||||| ||| |||||||||||||||| || | |||||||| ||||||| ||||| | ||| |||| | |||||||| | || |  || |||    
T  7099013 ccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacccgataccacaaaccctctcgatcaact 7099112  T
Q  200 aacaaacgccaacac 214  Q
    ||||||| |||||||    
T  7099113 aacaaactccaacac 7099127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 19115061 - 19115111
Alignment:
Q  194 tccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    ||||||||||| | |||||||||||| ||||| | ||||||||||||||||    
T  19115061 tccactaacaacctccaacaccatttccctaataaagcaatattaaactcc 19115111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 38296258 - 38296362
Alignment:
Q  121 gcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaa-tcatcaccctccactaacaaacgccaacaccattt 219  Q
    ||||||| |||||| || ||||| | || ||||||| || ||||||||||||||| |||| ||| || || | ||||||||| || ||||||||||||||    
T  38296258 gcccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaaaactcctc-ctctccactaataaccgccaacaccattt 38296356  T
Q  220 acctaa 225  Q
     |||||    
T  38296357 ccctaa 38296362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 42953006 - 42952969
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  42953006 ccaacaccatttacctaacaaagcaaaattaaactccc 42952969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 51072194 - 51072157
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  51072194 ccaacaccatttccctaacagagcaacattaaactccc 51072157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 7662865 - 7662777
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaa 240  Q
    ||||||||||| || || || ||| |||||||| || | |  ||||| ||||  |||||||||||||||||||||| |||| |||||||    
T  7662865 ccatacctagcaactaagacactataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaa 7662777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 8935599 - 8935639
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  8935599 ctcccgccaccaagaagaacaactccggcccccatcctcca 8935639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 54685161 - 54685213
Alignment:
Q  120 ggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 172  Q
    ||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  54685161 ggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacc 54685213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 6051120 - 6051278
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||||||||||||||||||||||| |||||| | | |||||||     
T  6051120 ctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacacctttctccacaaag 6051219  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||| | ||||| |||||| | ||||||||||||||| |||| |||||| |||||||||    
T  6051220 catcccgctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactcc 6051278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 35541604 - 35541710
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatatta 238  Q
    ||||||||||||||||||||||||||| |||||| | | ||||||| |||| | ||||| |||||| | ||||||||||||||| |||| |||||| |||    
T  35541604 cccatcctccacaccatacctagccactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgtta 35541703  T
Q  239 aactccc 245  Q
    |||||||    
T  35541704 aactccc 35541710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 47622700 - 47622543
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||||  |  |||||| |||||||||||||||||||||||||| |||  || ||      
T  47622700 ctcactatctctctccaccaagaagaacaactccggcccctatcctccaaacctccatccaccacaccatacctagccaccaacaccttacgtcataacc 47622601  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || |  || ||||||||||| ||||| ||||| |||||||| || |||||||||||    
T  47622600 cttccctatcaactaacaaacgtcaacatcattttcctaacagggctatattaaactc 47622543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 22191372 - 22191246
Alignment:
Q  119 cggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatt 218  Q
    ||||||||| || ||| || |||||||||| ||||||| |  ||||||||||||||| |||||| |  | |    || ||||| || | |||||||||||    
T  22191372 cggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctataccacatactacccttatcaactaataacctccaacaccatt 22191273  T
Q  219 tacctaacagagcaatattaaactccc 245  Q
    |||||||||||| || |||||||||||    
T  22191272 tacctaacagagaaacattaaactccc 22191246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 26131910 - 26131946
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26131910 ccaacaccatttacctaacagagcaacattaaactcc 26131946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 13867421 - 13867302
Alignment:
Q  121 gcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccattta 220  Q
    ||||||| |||||| ||||||| ||  | ||||||||| ||| ||||  |||||| |||| ||| || | |  ||||| ||||  |||||||||||||||    
T  13867421 gcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccaccaacatccgccaacaccattta 13867322  T
Q  221 cctaacagagcaatattaaa 240  Q
    ||||||| |||| |||||||    
T  13867321 cctaacaaagcactattaaa 13867302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 45270878 - 45270917
Alignment:
Q  206 cgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  45270878 cgccaacaccatttacctaacaatgcaatattaaactccc 45270917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 20796296 - 20796333
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  20796296 ccaacaccatttacctaacaaagcaaaattaaactccc 20796333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 32352867 - 32352775
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    ||||||||||| || || |||||| |||||||| || | |  ||||| ||||  |||||||||||||| ||||||| ||| | ||||||||||    
T  32352867 ccatacctagcgactaaaaccctataccacaaaccacctctatccaccaacatccgccaacaccattttcctaacaaagctaaattaaactcc 32352775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 33142782 - 33142682
Alignment:
Q  140 ccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaa 239  Q
    ||||||||| |||| || |  ||||||||||||||| |||||||  | || |  || |||||||| | |||||||||||||||||| ||||| | |||||    
T  33142782 ccatcctcctcaccgtaacgggccaccaacaccctataccacaagccttctctatcaactaacaacctccaacaccatttacctaagagagccaaattaa 33142683  T
Q  240 a 240  Q
    |    
T  33142682 a 33142682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 14440265 - 14440418
Alignment:
Q  90 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatc 189  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||| |||||||||||||| ||||||||||||||||||| || |    
T  14440265 ctatctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccataccatacctagccaacaacaccctacaccacaaaccacc 14440364  T
Q  190 accctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
     |  || |||||||||||||||||||||||  | ||||||||||| ||||||||    
T  14440365 cctatcaactaacaaacgccaacaccatttcaccaacagagcaatgttaaactc 14440418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 28253237 - 28253394
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||| |||||||||||||||||  ||||||| ||| ||| ||      
T  28253237 ctcactatctccctccaccaagaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccctcaacaccttacgccataacc 28253336  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||||||||||||||||||||||||| |||||||| || | |||||||||    
T  28253337 cttccctctccactaacaaacgccaacaccattttcctaacagggctaaattaaactc 28253394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 37445556 - 37445743
Alignment:
Q  32 gacacacacgacgcaaaccacccatcactcctaccttcaaccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcct 131  Q
    |||||||||  || ||||||||||||||  ||||||   | ||| ||||| ||||||||   ||||||||||||  |||||||||| |||||||||||||    
T  37445556 gacacacactccgtaaaccacccatcaccactacctcttatcccgtcccgaattctcacacactcccaccaccacgaagaacaactccggcccccatcct 37445655  T
Q  132 ccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccattt 219  Q
    ||| || ||  |||||| ||||||||||||||||||||||||||| ||| ||  ||||||  || ||||||| |||||||||||||||    
T  37445656 ccaacctcctgtcctccgcaccatacctagccaccaacaccctacgccagaacccatcactatcaactaacagacgccaacaccattt 37445743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 33515827 - 33515673
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  ||||||| || || |||||||||||||  |  |||||| |||||||||||||||||||||||||||||| ||||||  |||    
T  33515827 actatctccctccaccacgaagaacagctccgacccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaacccat 33515728  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||| || ||||||||||| |||| || |||||| ||||||||    
T  33515727 ctctatcaactaacaaccgtcaacaccatttccctagcaaagcaatgttaaactc 33515673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 26146746 - 26146891
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| || ||| ||| ||||||||| |||||| || |||||||||| | ||||| || ||||||||||||||| ||||||||  |   | ||||||     
T  26146746 ccaccaagaataaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaactactcctctccacc 26146845  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||    
T  26146846 aacaaacgccaacaccatttgcctaacaacgcaacattaaactccc 26146891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 43310790 - 43310935
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccact 199  Q
    ||||||| |||||| ||| ||||||||| |||||| || |||||||||| | ||||| || ||||||||||||||| ||||||||  |   | ||||||     
T  43310790 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaactactcctctccacc 43310889  T
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    || ||||||||||||||||| |||||||  |||| |||||||||||    
T  43310890 aataaacgccaacaccatttgcctaacaacgcaacattaaactccc 43310935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 12646091 - 12646179
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaaca 227  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||  |||| |  || |||||||| | |||||||||||| |||||||    
T  12646091 cccatcctccacaccttacctagccaccaacaccctataccacaatccatctctatctactaacaacctccaacaccattttcctaaca 12646179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 13416202 - 13416285
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 183  Q
    |||||||  ||||| ||| |||||||||||||||| || ||||||   ||||||||||||||| |||||||||| | |||||||    
T  13416202 ccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacccgataccacaa 13416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 12646056 - 12646101
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  12646056 actatctccctccaccaagaagaacaactccggcccccatcctcca 12646101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 15018180 - 15018242
Alignment:
Q  72 ccccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    |||||||||  || ||| ||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  15018180 ccccatccctaatcctccctacctcccgccaccaagaagaacaacttcggcccccaacctcca 15018242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 11233991 - 11233954
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  11233991 ccaacaccatttacctaacaaagcaaaattaaactccc 11233954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 30504820 - 30504775
Alignment:
Q  200 aacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||| |||||||| | || |||||||||||||||||||||||||    
T  30504820 aacaaatgccaacactacttccctaacagagcaatattaaactccc 30504775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 3769 - 3928
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||| ||||||  | |||||||| ||||||||| ||||||  |  ||||||  |||||||||||||||||| |||||| | | |||||||     
T  3769 ctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgtcacaccatacctagccactaacacctttctccacaaag 3868  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||| | ||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||    
T  3869 catccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactccc 3928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 2554123 - 2554280
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    |||| |||||||| ||||||  |||||||||| ||||||||||||||||  |  |||||| ||||||||||||||||||| |||||| | | |||||||     
T  2554123 ctcattatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacacctttctccacaaag 2554222  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | || | ||||| ||||||  |||||||||||||||| |||| |||||| ||||||||    
T  2554223 cttccctctccaataacaactgccaacaccatttacccaacaaagcaatgttaaactc 2554280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 14372611 - 14372473
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||  |   | ||| |||||||||||||||||||||||||| ||| ||| ||  | |    
T  14372611 actatctccctccaccaagaagaacaactccggcccccatcctccaaactttcgtccgccacaccatacctagccaccaacaccttacgccataaccctt 14372512  T
Q  189 caccctccactaacaaacgccaacaccatttacctaaca 227  Q
    | | ||||||||||||||||| ||||||||| |||||||    
T  14372511 ccctctccactaacaaacgcctacaccattttcctaaca 14372473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 13938236 - 13938392
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||||||||||  ||||||| | |||||||| ||||||||||||||||  |  |||||| || |||||||||||||||| |||||||||| |||| ||     
T  13938236 ctcactatctcctgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacaccctacgccac-aac 13938334  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |||| | ||| |||||||| | |||||||||||| | ||||| |||||| ||||||||    
T  13938335 catctctctctactaacaacctccaacaccattttcttaacaaagcaatgttaaactc 13938392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 18682196 - 18682038
Alignment:
Q  87 tcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatc 186  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||  |  |||||||||  ||||||||| |||||||||||| ||||||| ||  |    
T  18682196 tcactatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccatcctccgaaccatacctggccaccaacaccttacaccataaccc 18682097  T
Q  187 atcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
     || |  || |||||||| | |||||||||||| ||||||| |||| | ||||| ||||    
T  18682096 ctctctgtcaactaacaacctccaacaccattttcctaacaaagcagtgttaaaatccc 18682038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 17605957 - 17605800
Alignment:
Q  86 ctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaat 185  Q
    ||||| ||||||| |||| || |||||||||| ||||||||||||||||  |  ||||||||||| ||||||||||||| ||||||||||| |||||||     
T  17605957 ctcacaatctccctccacaaagaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccctactccacaaac 17605858  T
Q  186 catcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    |  | |  || |||||||  | |||||||||||| || |||| |||||| ||||||||    
T  17605857 ctcccctatcaactaacagccaccaacaccatttccccaacaaagcaatgttaaactc 17605800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 10922067 - 10922140
Alignment:
Q  83 attctcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccata 156  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||  |||||||||||||||||    
T  10922067 attctcactatctccctccaccaagaagaacaactccggcccccatccttcagccttccatcctccacaccata 10922140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 24766983 - 24766880
Alignment:
Q  140 ccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaa 239  Q
    |||||| |||||||||||||||||||||||||| | | ||||||| | || |  || | |||||| |||||||||||||||||||||| ||||| |||||    
T  24766983 ccatccgccacaccatacctagccaccaacacctttcgccacaaagcttccctatctagtaacaaccgccaacaccatttacctaacaaagcaacattaa 24766884  T
Q  240 actc 243  Q
    ||||    
T  24766883 actc 24766880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 10576870 - 10576716
Alignment:
Q  89 actatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcat 188  Q
    |||||||||| ||||||  |||| ||||| ||||||||||||||||  |  |||||| |||||||||||||||||| ||||||||||| || |||| |      
T  10576870 actatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaacaacaccctactccgcaaacctc 10576771  T
Q  189 caccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
    | |  || |||||||  |||||||||||||| || |||| | |||| ||||||||    
T  10576770 ccctatcaactaacagccgccaacaccatttccccaacaaaacaatgttaaactc 10576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 17577335 - 17577184
Alignment:
Q  92 atctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcac 191  Q
    ||||||| ||||||  ||||||||||  |||||||||||||||  |   |||||||||| ||||||||||||| ||||||||||| ||||||| |  | |    
T  17577335 atctccctccaccacaaagaacaactctggcccccatcctccaaaccatcatcctccacgccatacctagccaacaacaccctactccacaaacctcccc 17577236  T
Q  192 cctccactaacaaacgccaacaccatttacctaacagagcaatattaaactc 243  Q
      || |||||||  | |||||||||||| || |||| |||||| ||||||||    
T  17577235 tatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactc 17577184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 5041980 - 5042066
Alignment:
Q  32 gacacacacgacgcaaaccacccatcactcctaccttcaaccccatcccggattctcactatctcccaccaccaacaagaacaacttc 119  Q
    ||||||||||   |||||||||| ||||  |||||||| |||||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  5041980 gacacacacgcaacaaaccaccc-tcacgactaccttctaccccatctcggattctcactatctccctccaccaaaaagaataacttc 5042066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 21629692 - 21629588
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcacc-ctccactaacaaacgccaacaccatttacctaacagagcaatatt 237  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||| | |||||  || |||||||  ||||||||| |||| || |||| |||||| ||    
T  21629692 cccatcctccacgccatacctagccaacaacaccctactccacaaa-cctcacctatcaactaacagccgccaacacaatttccccaacaaagcaatgtt 21629594  T
Q  238 aaactc 243  Q
    ||||||    
T  21629593 aaactc 21629588  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 15956561 - 15956461
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatatta 238  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||| |  || |  || | |||||| |||||| ||||||| || ||||| |||||||||    
T  15956561 cccatccgccacaccatacctagccaccaacaccttacgccacaact-ttctctatcaattaacaaccgccaaaaccattttcccaacagggcaatatta 15956463  T
Q  239 aa 240  Q
    ||    
T  15956462 aa 15956461  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 18588902 - 18589011
Alignment:
Q  122 cccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttac 221  Q
    ||||||||||||| || ||| |||||| ||||||| |||||||||||||| | | |||| ||  | || |  || |||||||||||||||||||| ||||    
T  18588902 cccccatcctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccataacccgtctctatcaactaacaaacgccaacaccacttac 18589001  T
Q  222 ctaacagagc 231  Q
    | || |||||    
T  18589002 ccaatagagc 18589011  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 5085641 - 5085601
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  5085641 ctcccgccaccaagaagaacaacttcggcccccatcctcca 5085601  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 15602855 - 15602927
Alignment:
Q  100 ccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacacc 172  Q
    |||||||  ||||| ||| |||||||||||||||| || ||||||   ||||||||||||||| |||||||||    
T  15602855 ccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacc 15602927  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 34434897 - 34434936
Alignment:
Q  206 cgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  34434897 cgccaacaccatttacctaacaatgcaatattaaactccc 34434936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 26514245 - 26514335
Alignment:
Q  90 ctatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    ||||||||| |||||||  ||||| ||| ||||||||| ||||||  | |||  ||||| ||||||||| |||||||||||| ||| ||||    
T  26514245 ctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaacactctatacca 26514335  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 7956254 - 7956149
Alignment:
Q  126 catcctccagccgcccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaa 225  Q
    ||||||||| || ||| |||||| ||||||| |||||||||||||| | | |||| | | |||| |  || ||||||| ||||||||| || ||||| ||    
T  7956254 catcctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccaaagaccatctctatcaactaacatacgccaacatcacttacccaa 7956155  T
Q  226 cagagc 231  Q
    ||||||    
T  7956154 cagagc 7956149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 24767065 - 24767004
Alignment:
Q  73 cccatcccggattctcactatctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||||||  || ||||||||||||| ||||||  |||||||||| || |||||||||||||    
T  24767065 cccatccctaatcctcactatctccctccaccacgaagaacaactccgacccccatcctcca 24767004  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 32186201 - 32186294
Alignment:
Q  87 tcactatctcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    |||||| ||||| ||||||| |||||  ||| ||||||||| |||||| || |||| || || ||| ||| || ||||||||||||||| ||||    
T  32186201 tcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaacaccctatacca 32186294  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 503147 - 503107
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  503147 ctcccgccaccaagaagaacaactccggcccccatcctcca 503107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 1104459 - 1104411
Alignment:
Q  197 actaacaaacgccaacaccatttacctaacagagcaatattaaactccc 245  Q
    |||||||||| |||||||||||||||||||| |||| | |||| |||||    
T  1104459 actaacaaactccaacaccatttacctaacaaagcagtgttaatctccc 1104411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 8264748 - 8264788
Alignment:
Q  94 ctcccaccaccaacaagaacaacttcggcccccatcctcca 134  Q
    ||||| ||||||| |||||||||| ||||||||||||||||    
T  8264748 ctcccgccaccaagaagaacaactccggcccccatcctcca 8264788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 13086178 - 13086214
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  13086178 ccaacaccatttacctaacaaagcaacattaaactcc 13086214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 14552041 - 14552073
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaa 240  Q
    |||||||||||||||||| ||||||||||||||    
T  14552041 ccaacaccatttacctaatagagcaatattaaa 14552073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 14843701 - 14843601
Alignment:
Q  145 ctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||| ||||||| || || |||| ||||||| |||| ||| |||| |  || || ||||  |||||||||||||||||||||| | || |||||||||||    
T  14843701 ctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaacaaatcactattaaactcc 14843602  T
Q  245 c 245  Q
    |    
T  14843601 c 14843601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 19616380 - 19616348
Alignment:
Q  208 ccaacaccatttacctaacagagcaatattaaa 240  Q
    |||||||||||||||||||| ||||||||||||    
T  19616380 ccaacaccatttacctaacaaagcaatattaaa 19616348  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 28344 - 28450
Alignment:
Q  139 cccatcctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatatta 238  Q
    |||||||||| | ||||| || ||||||||||||||| ||||||||  |   | |||||| |||||||||||||||||||| |||||||  |||  ||||    
T  28344 cccatcctcctcgccatatcttgccaccaacaccctataccacaaactactcctctccaccaacaaacgccaacaccatttgcctaacaacgcagcatta 28443  T
Q  239 aactccc 245  Q
    |||||||    
T  28444 aactccc 28450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 4113 - 4021
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||| || || || |||||| |||||||| |||| |  ||||| ||||  |||||||||||||| |||||||||||| |||||||||||    
T  4113 ccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacagagcactattaaactcc 4021  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 34173 - 34073
Alignment:
Q  145 ctccacaccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||| ||||||| || || |||| ||||||| |||| ||| |||| | ||| || ||||  |||||||||| ||||||||||| |||| |||||||||||    
T  34173 ctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctctctaccaacattcgccaacaccttttacctaacaaagcactattaaactcc 34074  T
Q  245 c 245  Q
    |    
T  34073 c 34073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 134411 - 134319
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||| || || || |||||| |||||||| |||| |  ||||| ||||  |||||||||||||| ||||||| |||| |||||||||||    
T  134411 ccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactcc 134319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 312238 - 312146
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||| || || || |||||| |||||||| |||| |  ||||| ||||  |||||||||||||| ||||||| |||| |||||||||||    
T  312238 ccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactcc 312146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 327692 - 327600
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaactcc 244  Q
    |||||||| || || || |||||| |||||||| |||| |  ||||| ||||  |||||||||||||| ||||||| |||| |||||||||||    
T  327692 ccatacctggcaactaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactcc 327600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 67606 - 67691
Alignment:
Q  95 tcccaccaccaacaagaacaacttcggcccccatcctccagccgcccatcctccacaccatacctagccaccaacaccctacacca 180  Q
    |||||||||||| |||||| ||| | ||||||| |||||| || |||  ||||| ||||||||||||  | |||||||||| ||||    
T  67606 tcccaccaccaagaagaaccactccagcccccaacctccaacctccctgcctcctcaccatacctagaaatcaacaccctatacca 67691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 8187 - 8275
Alignment:
Q  152 ccatacctagccaccaacaccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaaa 240  Q
    ||||||||||| || || || ||| |||||||| || | |  ||||| ||||  |||||||||||||||||||||| |||| |||||||    
T  8187 ccatacctagcaactaagacactataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaa 8275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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