View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_233 (Length: 248)

Name: NF8810A_low_233
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_233
NF8810A_low_233
[»] chr4 (20 HSPs)
chr4 (103-235)||(40390972-40391104)
chr4 (7-106)||(40391556-40391655)
chr4 (101-222)||(38377891-38378011)
chr4 (122-229)||(784061-784168)
chr4 (7-106)||(40380215-40380314)
chr4 (103-236)||(15025860-15025991)
chr4 (103-227)||(48282800-48282920)
chr4 (124-193)||(15882103-15882172)
chr4 (124-188)||(10574064-10574128)
chr4 (103-238)||(6449624-6449758)
chr4 (130-232)||(11672485-11672586)
chr4 (123-238)||(43710918-43711033)
chr4 (124-193)||(52123652-52123721)
chr4 (103-194)||(23410332-23410424)
chr4 (135-238)||(31049959-31050063)
chr4 (103-238)||(33610024-33610159)
chr4 (149-238)||(20403238-20403328)
chr4 (103-190)||(35414559-35414646)
chr4 (143-208)||(14806204-14806269)
chr4 (173-237)||(33978566-33978630)
[»] chr8 (19 HSPs)
chr8 (105-236)||(12596936-12597067)
chr8 (103-238)||(10467436-10467572)
chr8 (121-234)||(32797017-32797130)
chr8 (120-238)||(39344663-39344781)
chr8 (103-226)||(26938819-26938941)
chr8 (124-238)||(33038295-33038408)
chr8 (120-236)||(17219673-17219790)
chr8 (124-190)||(17153669-17153735)
chr8 (103-230)||(8026105-8026231)
chr8 (123-210)||(16483876-16483963)
chr8 (121-196)||(42023957-42024032)
chr8 (124-190)||(17156948-17157014)
chr8 (142-231)||(24916031-24916119)
chr8 (103-189)||(35054983-35055069)
chr8 (134-227)||(24292165-24292257)
chr8 (121-225)||(33695214-33695318)
chr8 (124-161)||(17143142-17143179)
chr8 (154-238)||(2414964-2415047)
chr8 (174-230)||(26938628-26938684)
[»] chr5 (20 HSPs)
chr5 (103-236)||(16089767-16089900)
chr5 (103-236)||(15070000-15070134)
chr5 (103-236)||(19343634-19343767)
chr5 (103-238)||(36235834-36235969)
chr5 (103-238)||(5459091-5459225)
chr5 (103-233)||(26724196-26724327)
chr5 (101-196)||(1298817-1298911)
chr5 (122-209)||(38948632-38948719)
chr5 (140-202)||(6502283-6502345)
chr5 (184-239)||(35270751-35270806)
chr5 (121-238)||(38607376-38607494)
chr5 (149-238)||(14820414-14820503)
chr5 (122-229)||(30403539-30403647)
chr5 (171-238)||(39058478-39058545)
chr5 (142-234)||(5159469-5159561)
chr5 (204-235)||(26188812-26188843)
chr5 (140-195)||(34005654-34005709)
chr5 (141-238)||(34784025-34784121)
chr5 (111-168)||(39057143-39057200)
chr5 (122-236)||(4907077-4907187)
[»] chr6 (15 HSPs)
chr6 (102-236)||(17957112-17957246)
chr6 (103-226)||(17157991-17158114)
chr6 (103-230)||(6197898-6198025)
chr6 (103-238)||(24672350-24672483)
chr6 (121-236)||(4254508-4254623)
chr6 (130-230)||(10313395-10313495)
chr6 (103-223)||(4408948-4409058)
chr6 (164-238)||(10516584-10516657)
chr6 (120-238)||(30465127-30465245)
chr6 (156-237)||(34187124-34187205)
chr6 (103-230)||(3807157-3807278)
chr6 (103-210)||(5644646-5644753)
chr6 (116-207)||(12611904-12611994)
chr6 (103-161)||(12338950-12339008)
chr6 (142-218)||(14198530-14198606)
[»] chr3 (15 HSPs)
chr3 (103-236)||(44446805-44446938)
chr3 (103-238)||(28769459-28769594)
chr3 (101-196)||(50334584-50334679)
chr3 (103-236)||(34359413-34359546)
chr3 (103-238)||(20314968-20315101)
chr3 (121-238)||(38673254-38673372)
chr3 (122-236)||(44648123-44648235)
chr3 (103-210)||(52423102-52423210)
chr3 (122-236)||(39340853-39340965)
chr3 (119-190)||(41544534-41544605)
chr3 (157-231)||(45743817-45743891)
chr3 (130-234)||(17268915-17269020)
chr3 (178-238)||(16876464-16876524)
chr3 (173-238)||(2382870-2382936)
chr3 (103-168)||(20336927-20336992)
[»] chr7 (14 HSPs)
chr7 (102-236)||(20132136-20132270)
chr7 (122-230)||(28098618-28098727)
chr7 (103-238)||(13009317-13009453)
chr7 (126-236)||(11297840-11297951)
chr7 (103-238)||(27567617-27567754)
chr7 (123-196)||(34471348-34471421)
chr7 (142-238)||(25067732-25067828)
chr7 (103-238)||(30851589-30851724)
chr7 (103-226)||(22485125-22485251)
chr7 (124-210)||(48696447-48696532)
chr7 (123-236)||(25411518-25411631)
chr7 (142-218)||(12925313-12925389)
chr7 (115-234)||(33991899-33992019)
chr7 (148-196)||(39596738-39596786)
[»] chr1 (9 HSPs)
chr1 (107-236)||(20986010-20986141)
chr1 (103-238)||(33752913-33753048)
chr1 (103-190)||(29307555-29307642)
chr1 (124-236)||(13392892-13393006)
chr1 (103-236)||(16545363-16545495)
chr1 (147-227)||(37470903-37470983)
chr1 (103-190)||(29102970-29103057)
chr1 (103-161)||(23230836-23230894)
chr1 (104-169)||(35218150-35218215)
[»] chr2 (14 HSPs)
chr2 (131-238)||(34904091-34904198)
chr2 (121-238)||(8794653-8794770)
chr2 (116-238)||(10077684-10077808)
chr2 (103-240)||(35954302-35954440)
chr2 (103-236)||(39293064-39293196)
chr2 (121-236)||(30640995-30641111)
chr2 (111-238)||(31994684-31994811)
chr2 (122-236)||(24490520-24490638)
chr2 (122-238)||(6191170-6191285)
chr2 (103-235)||(29242513-29242646)
chr2 (136-235)||(855648-855752)
chr2 (111-210)||(27694475-27694574)
chr2 (141-228)||(434511-434598)
chr2 (146-196)||(36774112-36774162)
[»] scaffold0233 (1 HSPs)
scaffold0233 (121-226)||(16894-16999)
[»] scaffold0005 (2 HSPs)
scaffold0005 (101-236)||(253697-253831)
scaffold0005 (143-208)||(33458-33523)
[»] scaffold0020 (1 HSPs)
scaffold0020 (121-238)||(152141-152258)
[»] scaffold0036 (1 HSPs)
scaffold0036 (122-238)||(48396-48514)
[»] scaffold0478 (1 HSPs)
scaffold0478 (124-190)||(3352-3418)
[»] scaffold1911 (1 HSPs)
scaffold1911 (124-190)||(113-179)
[»] scaffold0720 (2 HSPs)
scaffold0720 (121-236)||(5440-5551)
scaffold0720 (115-152)||(7458-7495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-218)||(363064-363140)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 40391104 - 40390972
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40391104 tttagtccctacaaattttttattcacttttagtccctatttgcattttatagggactattttggagaactaaaagtattcattttttgtaaaatgtttt 40391005  T
Q  203 aaaaatagagattattcttacaaactacaatat 235  Q
    ||||||||||| |||||||||||||||||||||    
T  40391004 aaaaatagagactattcttacaaactacaatat 40390972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40391655 - 40391556
Alignment:
Q  7 tgagcattgtaagaggatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 106  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||  || |||||||||||||||||||||    
T  40391655 tgagcgttgtaagaggatttggtaatcagtaaaatgaggagtaaaaaaattgagataataatgtgataattcaatagatagatgtatataattcaattta 40391556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 38378011 - 38377891
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtt 200  Q
    |||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| | |||||||| ||||| |||    
T  38378011 aatttagtcctta-aaattttttattcacttttattccctatttgcattttatagggactattttggaggactaaaagtgttcattttttataaaaagtt 38377913  T
Q  201 ttaaaaatagagattattctta 222  Q
    || ||||||| || ||||||||    
T  38377912 tttaaaatagggactattctta 38377891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 784061 - 784168
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    |||||||||||||||  |||||| ||||||||| |||||| ||||||  ||||||| |||||||||||||||||| ||||| ||||||| ||||||| ||    
T  784061 ttattcacttttagtttctattttcattttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattattttt 784160  T
Q  222 acaaacta 229  Q
    | ||||||    
T  784161 agaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40380314 - 40380215
Alignment:
Q  7 tgagcattgtaagaggatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 106  Q
    ||||| |||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||| |||||||||||||   ||||||| |||| ||||||||||    
T  40380314 tgagcgttgtaagaggatttggtaatcagtaaagtgaagagtaaaaaaagtgagattatattgtgataattcaataaagagatgaatatgattcaattta 40380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 15025991 - 15025860
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||| |||||||||||||||  |||||||| |||||| ||||||| ||| ||||||| || ||||||||||| |||||    
T  15025991 tttagtccctacaaaaattttattcatttttagtccctatttatattttataaggactattttggaggact-aaagtataca-tttttgtaaaaagtttt 15025894  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||| || |||| | |||||||| ||||||    
T  15025893 caaaatagggactattatcacaaactataatatt 15025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 48282920 - 48282800
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||  |||||||||||||||||||    || |||||||||| ||||| ||| ||| ||||||| |||| ||||||||||||| |||||    
T  48282920 tttagtccctacaaaaaatttattcacttttagtcc---attacattttatagagactattttagaggactaaaaatatctattttttgtaaaa-gtttt 48282825  T
Q  203 aaaaatagagattattcttacaaac 227  Q
      ||||| ||| |||||||||||||    
T  48282824 ttaaataaagactattcttacaaac 48282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 15882103 - 15882172
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgta 193  Q
    |||||||||||||||||||||| |||||| ||||||||  |||||| ||||||| |||||||||||||||    
T  15882103 attcacttttagtccctatttgtattttagagggactatcttggaggactaaaactatccattttttgta 15882172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 10574128 - 10574064
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttt 188  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  10574128 attcacctttagtccctatttgcattttacagggactattttggaggactaaaaatatccatttt 10574064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 6449624 - 6449758
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||| ||||||  ||||||||||||||||||  |||||| |||| |||  ||||| |||| |  ||||||||| ||||| ||||| |||| |||||    
T  6449624 tttagtccttacaaaaaatttattcacttttagtcgatatttgtattt-ataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttt 6449722  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     ||||||| || |||| |||||||||||| ||||||    
T  6449723 taaaatagggactatttttacaaactacattattat 6449758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 11672485 - 11672586
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaacta 229  Q
    ||||||||  |||||  ||||||||||||||| |||| || ||||||||||| || |||||||||  | |||| |||||||||| |||||||||||||||    
T  11672485 ttttagtctttatttatattttatagggactattttgcaggactaaaagtataca-tttttgtaatttttttttaaaatagagactattcttacaaacta 11672583  T
Q  230 caa 232  Q
    |||    
T  11672584 caa 11672586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 43711033 - 43710918
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctta 222  Q
    ||||||||||||||| ||||||| |||| |||| |||||  || | | || |||||||||||||||||||| ||     | |||||| ||| ||||||||    
T  43711033 tattcacttttagtctctatttgtatttcatagagactatattagcggaccaaaagtatccattttttgtataaaaaaatcaaaataaagactattctta 43710934  T
Q  223 caaactacaatattat 238  Q
    ||||||||||||||||    
T  43710933 caaactacaatattat 43710918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 52123652 - 52123721
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgta 193  Q
    ||||||||||| |  ||||||| ||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  52123652 attcacttttaatatctatttgtattttatagagactattttggaggactaaaagtatccatattttgta 52123721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 23410332 - 23410424
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattt-tatagggactagtttggagaactaaaagtatccattttttgtaa 194  Q
    |||||||||||||||  || |||||||||||| ||  ||||||||||| |||| | |||| ||||||| |||||||||||  |||||||||||    
T  23410332 tttagtccctacaaaaaatatattcacttttattctttatttgcatttatatatgaactattttggaggactaaaagtatatattttttgtaa 23410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 31049959 - 31050063
Alignment:
Q  135 gtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 233  Q
    |||| ||||| ||||| |||| ||||| ||||||||||||||| | |||| |||||||||||| ||||| ||||||  || |||  |||||| |||||||    
T  31049959 gtccatatttacatttcatagagactattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaat 31050058  T
Q  234 attat 238  Q
    |||||    
T  31050059 attat 31050063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 33610159 - 33610024
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||| ||||| ||| | ||||| |||||||||| | |||||| || ||||  |||||| ||  ||| |||||| |||  ||||||||| |||| |||||    
T  33610159 tttagaccctataaaatttttatccacttttagttcttatttggatattatttggactatttcagaggactaaacgtagacattttttgcaaaaagtttt 33610060  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     ||||||  || |||||||| |||||||||||||||    
T  33610059 caaaataaggactattcttataaactacaatattat 33610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 20403328 - 20403238
Alignment:
Q  149 tttatagggactagtttggagaactaaaagtatccatttttt-gtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    ||||||||||||| | ||||| | ||||| |||||||||||| |||||| ||||| | | ||| || ||||||||||||||| ||||||||    
T  20403328 tttatagggactattgtggaggaataaaaatatccatttttttgtaaaaagtttttagattagggactattcttacaaactataatattat 20403238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 35414646 - 35414559
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    |||||||| || ||||| || ||||| ||||||||  ||||| ||||||||||||||||  ||| || ||||||||| ||||| ||||    
T  35414646 tttagtccatataaatttttgattcatttttagtctatatttacattttatagggactatgttgaaggactaaaagtctccatatttt 35414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 14806269 - 14806204
Alignment:
Q  143 ttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaat 208  Q
    |||| ||||||| ||| || ||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  14806269 ttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttataaaaat 14806204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 33978630 - 33978566
Alignment:
Q  173 taaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatta 237  Q
    ||||||| |||| ||| ||||||  || || |||||| ||||||||||||||||| |||||||||    
T  33978630 taaaagtgtccactttctgtaaatagtcttcaaaataaagattattcttacaaacaacaatatta 33978566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 12597067 - 12596936
Alignment:
Q  105 tagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaa 204  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||| |    
T  12597067 tagtccctacaaattttttattcacgtttagtccctatttgcattttatagggactattttggaggactaaatatatccattttttgtaaaatgttttca 12596968  T
Q  205 aaatagagattattcttacaaactacaatatt 236  Q
    ||||||||| || | |||||||||||||||||    
T  12596967 aaatagagactaattttacaaactacaatatt 12596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 10467436 - 10467572
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttt 201  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||| ||||    
T  10467436 tttagtccttacaaaaaatttattcatttttagtccctatttgcattttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttt 10467535  T
Q  202 taaaaatagagattattcttacaaactacaatattat 238  Q
    | ||||||| || |||||||||||  |||||||||||    
T  10467536 tcaaaatagggactattcttacaagttacaatattat 10467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 32797130 - 32797017
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||| || ||||||||| ||||||||||||| ||||| ||||||  || ||||||    
T  32797130 tttattcacttttagtccctaattgcattttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattct 32797031  T
Q  221 tacaaactacaata 234  Q
    ||||||||||||||    
T  32797030 tacaaactacaata 32797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 39344781 - 39344663
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| |||| ||||| ||||| ||||| ||||||   | |||||    
T  39344781 atttattcacttttagtccctatttacattttatagagactattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattc 39344682  T
Q  220 ttacaaactacaatattat 238  Q
    |||||||||||||||||||    
T  39344681 ttacaaactacaatattat 39344663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 26938819 - 26938941
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||| |||||||| |  |||| |||||    
T  26938819 tttagtccctacaaaaaatttattcacttttagtccctatttgcattttaaagggactattttgaaggactaaaagtgtccattttat-aaaaaagtttt 26938917  T
Q  203 aaaaatagagattattcttacaaa 226  Q
     ||||||| || ||||||||||||    
T  26938918 caaaatagggactattcttacaaa 26938941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 33038408 - 33038295
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttac 223  Q
    |||| ||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||||| ||||| |||||||  | |||||||||    
T  33038408 attcgcttttagtccctatttgaattttatagggactatcttg-agaactaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttac 33038310  T
Q  224 aaactacaatattat 238  Q
    ||||| |||||||||    
T  33038309 aaactgcaatattat 33038295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 17219673 - 17219790
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttttaaaaatagagattatt 218  Q
    |||||||||||||||||||||||||||| | || |||||||| ||||||| ||||||| |||||| ||||||||| || ||||| ||||||| || ||||    
T  17219673 atttattcacttttagtccctatttgcactgtaaagggactattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatt 17219772  T
Q  219 cttacaaactacaatatt 236  Q
     |||||||||| ||||||    
T  17219773 tttacaaactaaaatatt 17219790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 17153735 - 17153669
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||    
T  17153735 attcacttttagtccctatttgcattttagagggactatcttggaggactaaaagtatccatttttt 17153669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 8026231 - 8026105
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaa-atgttt 201  Q
    ||||||||||| |||  ||||||||||||||| ||  |||||||||||||||||||||  ||||||| ||||||||| || |||||| |||||  | |||    
T  8026231 tttagtccctataaaaaatttattcacttttactctttatttgcattttatagggact--tttggagtactaaaagtgtcaatttttcgtaaattttttt 8026134  T
Q  202 taaaaatagagattattcttacaaactac 230  Q
    | ||||||| || ||||||||||||||||    
T  8026133 ttaaaatagggactattcttacaaactac 8026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 16483963 - 16483876
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatag 210  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||  ||||||| |||||| ||||||| ||| ||||| |||||||    
T  16483963 tattcacttttagttcctatttgcattttacagagactattttggatgactaaaaatatccaatttttgttaaaagttttcaaaatag 16483876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 42023957 - 42024032
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||| ||||||||| | ||| ||||||||||    
T  42023957 tttattcatttttagtccctatttgctttttatatggactattttggaggactaaaagtgtacatattttgtaaaa 42024032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 17156948 - 17157014
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    ||||||| ||||||||||||||||||||| ||||| ||  |||||| ||||||||||||||||||||    
T  17156948 attcactcttagtccctatttgcattttaaagggattatcttggaggactaaaagtatccatttttt 17157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 24916031 - 24916119
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 231  Q
    ||||||||||||||| |||| ||||||| ||||||| |||||||||||| ||||| ||||  ||||||| || |||| ||||||||||||    
T  24916031 tttgcattttataggaactattttggaggactaaaaatatccattttttctaaaaagtttccaaaatag-gactatttttacaaactaca 24916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 35054983 - 35055069
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcatttt-atagggactagtttggagaactaaaagtatccattttt 189  Q
    |||||| ||||||||  ||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||||||| || ||||||||    
T  35054983 tttagttcctacaaaa-atttattcatttttagtccttaattgcatttttatagggactattttggagaactaaaaatacccattttt 35055069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 24292165 - 24292257
Alignment:
Q  134 agtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaac 227  Q
    |||||||||||| |||||| |||||||| |||| || |||||||||||||||||||| |||||   ||| ||||||| || | |||||||||||    
T  24292165 agtccctatttgtattttacagggactattttg-aggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaac 24292257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 33695318 - 33695214
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||||| ||||| ||  |||||  ||||||||| ||||| ||||||| | ||||| ||| || |||||||||||| |||| |||||| ||| ||||||    
T  33695318 tttattcatttttaatctttatttatattttatagagactattttggaggaataaaaatattcagtttttgtaaaatcttttcaaaataaagactattct 33695219  T
Q  221 tacaa 225  Q
    |||||    
T  33695218 tacaa 33695214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 17143179 - 17143142
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17143179 attcacttttagtccctatttgcattttagagggacta 17143142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 2415047 - 2414964
Alignment:
Q  154 agggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    |||||||| ||||||| || |||||||||||| |||||||||| |||||    |||| || |||||||||||||||| |||||||    
T  2415047 agggactattttggaggaccaaaagtatccat-ttttgtaaaaagttttcgttatagggactattcttacaaactacgatattat 2414964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 26938628 - 26938684
Alignment:
Q  174 aaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactac 230  Q
    |||||| ||||||||||  |||| ||||| ||||||| || ||||||||||||||||    
T  26938628 aaaagtgtccattttttcaaaaaagttttcaaaatagggactattcttacaaactac 26938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 16089900 - 16089767
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||| |||||    
T  16089900 tttagtccttacaaattttttattcacttttagtccatatttgcattttatagggactattttagaggactaaaagtacccattttttgtaaaaagtttt 16089801  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
    ||||| ||||| ||||||||||||||| ||||||    
T  16089800 aaaaacagagactattcttacaaactataatatt 16089767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 15070134 - 15070000
Alignment:
Q  103 tttagtccctacaaatta-tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttt 201  Q
    |||||||||||||||  | |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||| |||||||||||||||||| ||||    
T  15070134 tttagtccctacaaaaaaatttattcacttttagtccctatttacattttatagagactattttgaaggactaaaaatatccattttttgtaaaaagttt 15070035  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | ||||| |||| |||| |||||||||||||||||    
T  15070034 tcaaaatcgagactattattacaaactacaatatt 15070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 19343767 - 19343634
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  19343767 tttaggccctgcaaaaaatttattcacttttagtccctatttgcattttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttt 19343668  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||   | |||| |||||||||||||||||    
T  19343667 taaaatatgaactatttttacaaactacaatatt 19343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 36235969 - 36235834
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||| ||||||| | ||||| ||| |||||||| ||||| |||||    
T  36235969 tttagtccctacaaattttttattcatttttagtccttatttgcattttataaggactattttggaggaataaaaatattcattttttataaaaagtttt 36235870  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     ||||| | || | ||||||||||||| ||||||||    
T  36235869 taaaatggggactgttcttacaaactaaaatattat 36235834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 5459091 - 5459225
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||| ||  |||     
T  5459091 tttagtccctacaatttttttattcatttttaatccctatttgcattttatagggactattttggaggaataaaagtattcattttttgtagaaaattta 5459190  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
    |||||||| ||  ||||||| |||||| ||||||||    
T  5459191 aaaaataggga-cattcttataaactataatattat 5459225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 26724327 - 26724196
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatt-ttttgtaaaatgttt 201  Q
    ||||| ||||| |||  |||||||||||||||||| |||||| ||||||||| |||||| ||||||| |||||||||||||||| |||||||||| ||||    
T  26724327 tttagcccctataaaaaatttattcacttttagtctctattttcattttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttt 26724228  T
Q  202 taaaaatagagattattcttacaaactacaat 233  Q
    | ||||||| || | |||||| ||| ||||||    
T  26724227 tcaaaatagggactgttcttataaattacaat 26724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 1298911 - 1298817
Alignment:
Q  101 aatttagtccctacaaatta--tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||| ||||||||||||||    
T  1298911 aatttagtccctacaaaaaaaatttattcacttttagtccctatttgcattttatagggactattttagag---taaaagtattcattttttgtaaaa 1298817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38948719 - 38948632
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaata 209  Q
    |||||||||||| ||||||||||| ||||||||||||||| || || | ||||||||| |||||||||||||||| ||||| ||||||    
T  38948719 ttattcacttttggtccctatttgaattttatagggactatttgggtggactaaaagtgtccattttttgtaaaaagtttttaaaata 38948632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 6502345 - 6502283
Alignment:
Q  140 tatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  6502345 tatttacattttatagggactattttggaggactaaaagtatccaatttttgtaaaaagtttt 6502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 35270806 - 35270751
Alignment:
Q  184 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattatt 239  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  35270806 attttttgttaaaagttttcaaaatagagattattcttacaaactacaagattatt 35270751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 38607494 - 38607376
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt-gtaaaatgttttaaaaatagagattattc 219  Q
    |||||| |||||||||||| ||||||||||||||| ||||| |||| |  ||||||| |||  ||||||| |||| | ||||| ||||||  || |||||    
T  38607494 tttatttacttttagtcccgatttgcattttatagagactattttgaaagactaaaaatatatattttttggtaacaagttttcaaaataaggactattc 38607395  T
Q  220 ttacaaactacaatattat 238  Q
    | | |||||||||||||||    
T  38607394 taaaaaactacaatattat 38607376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 14820414 - 14820503
Alignment:
Q  149 tttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    |||||| |||||| |||| || |||||||||  ||||||||| ||||| ||||| ||||||  ||||||| |||||||||||| ||||||    
T  14820414 tttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactacattattat 14820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 30403539 - 30403647
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatag-ggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||||||||||||   ||||| ||| |||||  |||||| ||||||| |||||| ||  ||||||||||||||| ||||| ||||||  || ||||||    
T  30403539 ttattcacttttagtttatatttacatgttataaaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattct 30403638  T
Q  221 tacaaacta 229  Q
    |||||||||    
T  30403639 tacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 39058478 - 39058545
Alignment:
Q  171 actaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    ||||||||| |||||| ||||||||| ||||| ||||||  || ||||||||||||||||||| ||||    
T  39058478 actaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaatgttat 39058545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 5159469 - 5159561
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaata 234  Q
    ||||||||||||||  | || ||||||| |||| ||||||||||||||||| ||| ||||| ||||||  || |||| ||| |||||| ||||    
T  5159469 tttgcattttatagatattattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataata 5159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 26188812 - 26188843
Alignment:
Q  204 aaaatagagattattcttacaaactacaatat 235  Q
    ||||||||||||||||||||||||||||||||    
T  26188812 aaaatagagattattcttacaaactacaatat 26188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 34005654 - 34005709
Alignment:
Q  140 tatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaa 195  Q
    |||||||||||||||||||||| |||  || ||||||| ||| |||||||||||||    
T  34005654 tatttgcattttatagggactattttaaaggactaaaaatatacattttttgtaaa 34005709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 34784121 - 34784025
Alignment:
Q  141 atttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    ||||| |||||||||| |||| |||| || |||||||||||  |||||||  |||| ||||| |||||| ||| |||||| | ||| |||||||||||    
T  34784121 atttgtattttataggaactattttgaaggactaaaagtat-tattttttagaaaaagttttcaaaataaagaatattctaataaattacaatattat 34784025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 39057143 - 39057200
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 168  Q
    |||||||  ||||||||||||||| ||| ||||| |||||||| ||||||| ||||||    
T  39057143 ctacaaaaaatttattcacttttaatccttatttacattttattgggactattttgga 39057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 4907187 - 4907077
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    |||||||||||| |||| |||||  |||||||| ||| || ||||| | |||||   |||| || |||| ||||| |||| |||| |||| |||||| ||    
T  4907187 ttattcacttttggtccttatttatattttatatggattattttggtggactaa---tatctatattttataaaaagtttcaaaa-tagaaattattttt 4907092  T
Q  222 acaaactacaatatt 236  Q
    |||||||||||||||    
T  4907091 acaaactacaatatt 4907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 17957246 - 17957112
Alignment:
Q  102 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttt 201  Q
    ||||||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  17957246 atttagtccttataaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 17957147  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | |||| ||||| ||||||||||||||| ||||||    
T  17957146 tcaaaacagagactattcttacaaactataatatt 17957112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 17157991 - 17158114
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||| ||| ||| |||| ||||||||||||||||||||| |||||    
T  17157991 tttagtccctacaaaaaaattattcacttttagtccctatttgcatcttatagagactacttttgaggactacaagtatccattttttgtaaaaagtttt 17158090  T
Q  203 aaaaatagagattattcttacaaa 226  Q
     |||||||||||||||||||||||    
T  17158091 caaaatagagattattcttacaaa 17158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 6198025 - 6197898
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||| ||   ||||||||||||| |||| ||||| |||||||||||||||| ||||||| | ||||||| |||||||||| ||||| |||||    
T  6198025 tttagtccctacgaaaagtttattcacttttggtccttatttacattttatagggactattttggaggaataaaagtgtccattttttctaaaaagtttt 6197926  T
Q  203 aaaaatagagattattcttacaaactac 230  Q
     |||||||||| ||||||||||||||||    
T  6197925 caaaatagagactattcttacaaactac 6197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 24672483 - 24672350
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||||| || |||||||||||||| ||| | |||||| ||||||| ||||||| ||||  |||||| | ||  |||||    
T  24672483 tttagtccctacaaaaattttattcactattggtccctatttgcatcttaaatggactattttggaggactaaaaatatctttttttttttaa--gtttt 24672386  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     |||||||||| |||| ||||||| |||||||||||    
T  24672385 taaaatagagactattattacaaattacaatattat 24672350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 4254508 - 4254623
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||||| ||||||| ||| ||||| ||||||| | |||||| |||||||   ||||||| |||||||||||||||  ||||| ||||||| ||||||| |    
T  4254508 tttatttacttttaatccttattttcattttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttt 4254607  T
Q  221 tacaaactacaatatt 236  Q
    ||||||||||| ||||    
T  4254608 tacaaactacagtatt 4254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 10313495 - 10313395
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaacta 229  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |  ||||| | | |||| |||| || |||| || |||||||||||||||    
T  10313495 ttttagtccttatttgcattttatagggactattttggaggactaaaagtgtatattttcttttaaatattttcaatatagggactattcttacaaacta 10313396  T
Q  230 c 230  Q
    |    
T  10313395 c 10313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 4408948 - 4409058
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||| ||| |||||| | |||||||||||||||| ||||||| |||||||||||||||| |||||| ||||          ||||||||||||| |||||    
T  4408948 tttaatccttacaaaatttttattcacttttagttcctatttacattttatagggactattttggaaaact----------attttttgtaaaaagtttt 4409037  T
Q  203 aaaaatagagattattcttac 223  Q
     |||||||||| |||||||||    
T  4409038 caaaatagagactattcttac 4409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 10516584 - 10516657
Alignment:
Q  164 ttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    |||||| ||||||||||||||| |||||||||| ||| | ||| ||| || ||||||||||||||||||||||||    
T  10516584 ttggaggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatattat 10516657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 30465127 - 30465245
Alignment:
Q  120 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||| |||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  |||| ||||||| || |||||    
T  30465127 atttattcactcttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttttaaaatagggactattc 30465226  T
Q  220 ttacaaactacaatattat 238  Q
    ||||||||| |||||||||    
T  30465227 ttacaaacttcaatattat 30465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 34187205 - 34187124
Alignment:
Q  156 ggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatta 237  Q
    |||||| |||| || || |||||||| |||||||| ||| | ||||| |||||||||| ||||||||| |||||||||||||    
T  34187205 ggactattttgaaggaccaaaagtattcattttttttaacaagttttcaaaatagagactattcttacgaactacaatatta 34187124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 3807278 - 3807157
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||| ||||||||   ||||||||||||| |||| | ||| ||||||||| |||||| ||||||      ||||| || ||||||||| ||| |||||    
T  3807278 tttagttcctacaaaaagtttattcacttttggtccttgttttcattttataaggactattttgga------aaagtgtctattttttgttaaaagtttt 3807185  T
Q  203 aaaaatagagattattcttacaaactac 230  Q
     ||||||| || ||||||||||||||||    
T  3807184 caaaatagggactattcttacaaactac 3807157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 5644646 - 5644753
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  ||||||||||| |||||||||| || ||| ||||||  |||| ||||||| ||||||| |||   |||||||| ||| |||||    
T  5644646 tttagtctctataaaacatttattcactcttagtccctacttacatcttatagacactattttggaggactaaaattataatttttttgtcaaaagtttt 5644745  T
Q  203 aaaaatag 210  Q
     |||||||    
T  5644746 taaaatag 5644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 12611994 - 12611904
Alignment:
Q  116 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaa 207  Q
    |||| |||||||||||||||| | ||||| |||||||||| ||||| ||||| | || |||| |||  ||||||||||||| | ||||||||    
T  12611994 aattttttattcacttttagttc-tattttcattttatagtgactattttggtggacaaaaaatattaattttttgtaaaaagatttaaaaa 12611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 12339008 - 12338950
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||| ||||||||| |||||||||||||||||  | |||| ||||||||| |||||    
T  12339008 tttagtcgctacaaattttttattcacttttagtctttgtttgtattttatagagacta 12338950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 14198530 - 14198606
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattatt 218  Q
    ||||| ||||||| ||| || |||| || ||||||| |||| ||||||| ||||| ||||||||||||  |||||||    
T  14198530 tttgctttttataaggattattttgaaggactaaaaatatctattttttataaaaagttttaaaaataaggattatt 14198606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 44446805 - 44446938
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| |||||    
T  44446805 tttagttcttacaaaatttttattcacttttagtccctatttgcattttatagggactattttggaggactaaaagtacacattttttgtaaaaagtttt 44446904  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||| ||||| ||||||||||||||| ||||||    
T  44446905 caaaacagagactattcttacaaactataatatt 44446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 28769459 - 28769594
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||| |||||| ||||||| | |||||||||| ||||| ||||||| |||||    
T  28769459 tttaatccctataaaaaatttattcacttttagtccttatttgcattttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttt 28769558  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     |||||| ||| ||||||||||||||||||||||||    
T  28769559 taaaataaagactattcttacaaactacaatattat 28769594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 50334584 - 50334679
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||    
T  50334584 aatttagtccctacaaaaaatttattcacttttagttcctatttgcattttatagggactattttagaggactaaaaatatccattttttgtaaaa 50334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 34359546 - 34359413
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||   |||||||||||||| | ||||||| |||||||||||||||  |||| || ||||||| |||||||||||||||||| |||||    
T  34359546 tttagtccctacaaaaattttattcacttttaattcctatttacattttatagggacttttttgaaggactaaaattatccattttttgtaaaaagtttt 34359447  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||| || ||  ||| |||||||||| ||||||    
T  34359446 caaaacagggaccatttttacaaactataatatt 34359413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 20315101 - 20314968
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||||||| | ||||||| |||  ||| ||  |||||||||||||  ||||    
T  20315101 tttagtctctataaaaaatttattcacttttagtccctatttacattttatagggacaattttggagtact--aagcataaattttttgtaaaaaatttt 20315004  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     |||||||||| |||| ||||||| | |||||||||    
T  20315003 caaaatagagactattattacaaaattcaatattat 20314968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 38673254 - 38673372
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    ||||||||||||||||| ||| ||  ||||||| ||||||| ||||||| |||||||||||| | |||||||||||| |||||| ||| ||  | |||||    
T  38673254 tttattcacttttagtctctacttatattttatggggactattttggaggactaaaagtatctatttttttgtaaaaggttttacaaacagtaaatattc 38673353  T
Q  220 ttacaaactacaatattat 238  Q
    ||||||| |||||||||||    
T  38673354 ttacaaattacaatattat 38673372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 44648235 - 44648123
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    |||||||||||||||| ||||||| | ||||||||||||| ||| ||| |||||||||||| |  |||||||||| ||||| ||||||  |  ||| |||    
T  44648235 ttattcacttttagtctctatttgaactttatagggactatttttgaggactaaaagtatcaa--ttttgtaaaaagttttcaaaataaggtctatactt 44648138  T
Q  222 acaaactacaatatt 236  Q
    |||||||||||||||    
T  44648137 acaaactacaatatt 44648123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 52423210 - 52423102
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaact-aaaagtatccattttttgtaaaatgttt 201  Q
    |||| |||||| |||  ||||||| |||||||| ||||||||||||||||||||| |||  |||||| ||| ||||||||||||||||  ||||| ||||    
T  52423210 tttaatccctataaaaaatttatttacttttagcccctatttgcattttataggggctatattggaggactaaaaagtatccatttttaataaaaagttt 52423111  T
Q  202 taaaaatag 210  Q
    | |||||||    
T  52423110 tcaaaatag 52423102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 39340965 - 39340853
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||| |  |||||| |||||||||  ||||| ||||||| ||||||||||  ||||||||||||||   ||  ||||||| || |||| ||    
T  39340965 ttattcacttttactttctattttcattttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactattttt 39340868  T
Q  222 acaaactacaatatt 236  Q
    |||||||||||||||    
T  39340867 acaaactacaatatt 39340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 41544534 - 41544605
Alignment:
Q  119 tatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    |||||||||||||||||||||||| ||||||||| ||| |||| ||||||  | ||||||| ||||||||||    
T  41544534 tatttattcacttttagtccctatatgcattttacaggaactattttggaagattaaaagtgtccatttttt 41544605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 45743891 - 45743817
Alignment:
Q  157 gactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 231  Q
    ||||| ||||||| || |||||| |||||||||||||||| ||||| ||||||| ||  ||||||||||||||||    
T  45743891 gactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactaca 45743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 17269020 - 17268915
Alignment:
Q  130 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttg-taaaatgttttaaaaatagagattattcttacaaact 228  Q
    ||||| || |||||| ||||||||| ||| || |||  |||| ||||||||| ||||||||  ||||||||||  |||||| ||| |||| |||||||||    
T  17269020 ttttaatctctattttcattttatatggattattttttagaattaaaagtattcatttttttataaaatgtttataaaatatagactatttttacaaact 17268921  T
Q  229 acaata 234  Q
    ||||||    
T  17268920 acaata 17268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 16876524 - 16876464
Alignment:
Q  178 gtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    ||||| |||||||||||  | |||| ||||||| || ||||||||||||||||||||||||    
T  16876524 gtatcaattttttgtaatttttttttaaaatagggactattcttacaaactacaatattat 16876464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 2382870 - 2382936
Alignment:
Q  173 taaaagtatccattttttgtaaaatgttttaaaaatagagatta-ttcttacaaactacaatattat 238  Q
    ||||||||| |||||||||||||| ||||| |||||||||| || |||| ||||||| |||| ||||    
T  2382870 taaaagtattcattttttgtaaaaagttttcaaaatagagaatatttctcacaaactgcaattttat 2382936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 20336992 - 20336927
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 168  Q
    ||||| ||||| |||  ||||||||||||||||| |||||||  ||||||||||||| | ||||||    
T  20336992 tttagcccctataaaaaatttattcacttttagttcctatttatattttatagggacaattttgga 20336927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 20132270 - 20132136
Alignment:
Q  102 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttt 201  Q
    ||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  20132270 atttagttcttacaaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 20132171  T
Q  202 taaaaatagagattattcttacaaactacaatatt 236  Q
    | |||| ||||| |||||||||||| || ||||||    
T  20132170 tcaaaacagagactattcttacaaattataatatt 20132136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 28098727 - 28098618
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgt-aaaatgttttaaaaatagagattattct 220  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |||| ||||| ||||||  |||||||      
T  28098727 ttatttacttttagtccctatttgcattttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttc 28098628  T
Q  221 tacaaactac 230  Q
    ||||||||||    
T  28098627 tacaaactac 28098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 13009317 - 13009453
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttt 201  Q
    |||||||||||||||   |||||||||  ||| || |||||| ||||||| |||||||| ||||||| ||||||||||| || |||||||||||| |||     
T  13009317 tttagtccctacaaaagttttattcacaattaatctctatttacattttacagggactaatttggaggactaaaagtattcacttttttgtaaaaagtta 13009416  T
Q  202 taaaaatagagattattcttacaaactacaatattat 238  Q
    | ||||||  || ||||||||||||||||||||||||    
T  13009417 ttaaaataacgactattcttacaaactacaatattat 13009453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 11297951 - 11297840
Alignment:
Q  126 tcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt-gtaaaatgttttaaaaatagagattattcttaca 224  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||| || ||||| ||||||| || |||| |||||    
T  11297951 tcactttttgtccctatttgtattttaaagggactattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttaca 11297852  T
Q  225 aactacaatatt 236  Q
    ||||| ||||||    
T  11297851 aactaaaatatt 11297840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 27567617 - 27567754
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcc--attttttgtaaaatgtt 200  Q
    ||||||||||| |||   ||| |||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||| ||| |   ||||||| |||| |||    
T  27567617 tttagtccctaaaaaagttttcttcacttttaatccatatttgcattttataaggactattttggaggactaaaaatatactttttttttgcaaaaagtt 27567716  T
Q  201 ttaaaaatagagattattcttacaaactacaatattat 238  Q
    || ||||||  || ||||||||||||||||||||||||    
T  27567717 ttcaaaataaggactattcttacaaactacaatattat 27567754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 34471421 - 34471348
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| || |||||| |||| ||||||||||||||    
T  34471421 tattcacttttagtccctatttgcattttatagagactattttgaaggactaaaggtatacattttttgtaaaa 34471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 25067828 - 25067732
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 238  Q
    |||||||||| ||| ||||| ||||||  |||||||||||||||||||||||||  ||||| ||||||  || |||| |||||||||| ||||||||    
T  25067828 tttgcattttctagagactattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattat 25067732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 30851589 - 30851724
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    ||||||| ||| |||  |||||||||||||||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  ||||    
T  30851589 tttagtctctataaaacatttattcacttttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttt 30851688  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     ||||||| || |||||||||||||| |||||||||    
T  30851689 taaaatagggactattcttacaaacttcaatattat 30851724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 22485125 - 22485251
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggac----tagtttggagaactaaaagtatccattttttgtaaaatg 198  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||    || ||||||| ||||| ||| || |||||    |||| |    
T  22485125 tttagtccgtacaaatt-tttatttacttttagtccctatttgcattttataaggactatttaatttggaggactaatagtgtctattttggcaaaaaag 22485223  T
Q  199 ttttaaaaatagagattattcttacaaa 226  Q
    |||||||||||| ||| |||||||||||    
T  22485224 ttttaaaaatagggatcattcttacaaa 22485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 48696532 - 48696447
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatag 210  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| | | |||| ||||| ||||| |||||||    
T  48696532 attcacttttagtccctatttgcattttatagagactattttggaggactaaaaatattc-tgttttctaaaaagtttttaaaatag 48696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 25411518 - 25411631
Alignment:
Q  123 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctta 222  Q
    ||||| ||||||||| || |||  |||||||||| |||| ||| ||||| ||||| |||||||||||   |||| || || ||||||  || ||||||||    
T  25411518 tattctcttttagtcactgtttatattttataggaactattttagagaattaaaaatatccatttttgtaaaaaagtatttaaaatattgactattctta 25411617  T
Q  223 caaactacaatatt 236  Q
    ||||||||||||||    
T  25411618 caaactacaatatt 25411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 12925389 - 12925313
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattatt 218  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||| ||||||||||||| ||||||||||||  |||||||    
T  12925389 tttgctttttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattatt 12925313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 33992019 - 33991899
Alignment:
Q  115 aaattatttattcacttttagtccctatttgcattttatagggactagtttggagaa-ctaaaagtatccattttttgtaaaatgttttaaaaatagaga 213  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||| || |||||||||   |||| ||| ||||||||||||||    || |||||| |||    
T  33992019 aaattttttattcacgtttagtccctatttgtattttataaggaatattttggagaataaaaaaatattcattttttgtaaaaaaaattcaaaatataga 33991920  T
Q  214 ttattcttacaaactacaata 234  Q
      ||||||| |||||||||||    
T  33991919 ccattcttaaaaactacaata 33991899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 39596738 - 39596786
Alignment:
Q  148 ttttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  39596738 ttttatagagactattttggagaactaaaagtattcattttttgtaaaa 39596786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 20986141 - 20986010
Alignment:
Q  107 gtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca--ttttttgtaaaatgttttaa 204  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |  |||||||||||| ||||| |    
T  20986141 gtccctacaaaaaatttatttacttttagtccttatttgcattttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttca 20986042  T
Q  205 aaatagagattattcttacaaactacaatatt 236  Q
    |||||| || ||||||| ||||||||||||||    
T  20986041 aaatagggactattcttgcaaactacaatatt 20986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 33752913 - 33753048
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||| ||||||||| || |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| | |||||||||||| |   |||    
T  33752913 tttaatccctacaatttttttattcacttttagtccttatttacattttatagggactattttggagaagtaaaagtgttcattttttgtaataaagttt 33753012  T
Q  203 aaaaatagagattattcttacaaactacaatattat 238  Q
     ||||||| ||  |||||||||||||||||||||||    
T  33753013 caaaatagtgaccattcttacaaactacaatattat 33753048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 29307555 - 29307642
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  29307555 tttagtccctacaaattttttattaactcttagtccctatttgcattttatagggactattttggaggactaaatatatccatttttt 29307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 13393006 - 13392892
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatt-ttttgt-aaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||||||||| || |||||||| | |||| ||||||||||||||| |||||||| |||||| |||| ||||| ||||||| || |||| ||    
T  13393006 attcacttttagtccctatatgtattttatatgaactattttggagaactaaaattatccatttttttgtaaaaaagtttttaaaatagggactattttt 13392907  T
Q  222 acaaactacaatatt 236  Q
    |||||||||||||||    
T  13392906 acaaactacaatatt 13392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 16545363 - 16545495
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||  ||||||  ||||||||||||||| | || ||||||||||| || |||||| ||||||| ||||||| ||||||||||||||| || |||||    
T  16545363 tttagtctgtacaaaaaatttattcacttttactaccaatttgcattttgtaaggactattttggaggactaaaaatatccattttttgtataaagtttt 16545462  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     ||||||| ||  ||| ||| |||||||||||||    
T  16545463 caaaatagggaccattttta-aaactacaatatt 16545495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 37470903 - 37470983
Alignment:
Q  147 attttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaac 227  Q
    ||||||||| ||||| ||||||| |||||||| ||||||||||||||||| |||||  ||||||  | |||||||||||||    
T  37470903 attttatagagactattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 29103057 - 29102970
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    |||| ||| ||||||  ||||||||||||||||||| ||||||| ||||||||  |||| ||||||| ||||||| |||| |||||||    
T  29103057 tttaatccatacaaaaaatttattcacttttagtccttatttgctttttatagatactattttggaggactaaaaatatctatttttt 29102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 23230836 - 23230894
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 161  Q
    ||||||||||||||| | ||||||||||||||||| |||| | ||||||||| ||||||    
T  23230836 tttagtccctacaaaatttttattcacttttagtcactatatacattttataaggacta 23230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 35218215 - 35218150
Alignment:
Q  104 ttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggag 169  Q
    ||||| |||||||| | |||||| ||||||||||  ||||| |||||||||||||||| |||||||    
T  35218215 ttagttcctacaaaatttttatttacttttagtctttatttacattttatagggactattttggag 35218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 34904198 - 34904091
Alignment:
Q  131 tttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactac 230  Q
    |||||||||||||||||||||| | |||||| |||  || |||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||    
T  34904198 tttagtccctatttgcattttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactac 34904099  T
Q  231 aatattat 238  Q
    ||||||||    
T  34904098 aatattat 34904091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 8794770 - 8794653
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||  ||||||| | |||||||||||||||| ||||| ||||||| || ||||||    
T  8794770 tttattcacttttagtccctatttgcattttataggagctattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattct 8794671  T
Q  221 tacaaactacaatattat 238  Q
    ||| || |||||||||||    
T  8794670 tacgaattacaatattat 8794653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 10077808 - 10077684
Alignment:
Q  116 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatt--ttttgtaaaatgttttaaaaatagaga 213  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||| ||||||||  |||||||||| ||||| ||||||| ||    
T  10077808 aattttttattcacttttagtccatatttgtattttattgggactattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaataggga 10077709  T
Q  214 ttattcttacaaactacaatattat 238  Q
     |||| |||||||||||||||||||    
T  10077708 ctattattacaaactacaatattat 10077684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 35954440 - 35954302
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaag-tatccattttttgtaaaatgttt 201  Q
    |||||||||||||| || ||||||||||||||||||||| ||  ||||||||||| ||| ||||||| |||||||| | || ||||||  ||||| | ||    
T  35954440 tttagtccctacaatttttttattcacttttagtccctagttatattttataggggctattttggaggactaaaagttttcaatttttattaaaaagatt 35954341  T
Q  202 taaaaatagagattattcttacaaactacaatattattg 240  Q
    | | |||||||| ||||||||||||||||||||||||||    
T  35954340 ttataatagagactattcttacaaactacaatattattg 35954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 39293064 - 39293196
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtttt 202  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||| |||||| ||||||| | ||||| ||||||||||||  ||||||||||    
T  39293064 tttagtccctacaaaaaaattattcacttttagtccctattttcattttatatggactattttggaggaataaaaatatccatttttt-aaaaatgtttt 39293162  T
Q  203 aaaaatagagattattcttacaaactacaatatt 236  Q
     |||||||  | |||| ||||||| |||||||||    
T  39293163 taaaataggaactattattacaaattacaatatt 39293196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 30640995 - 30641111
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||| ||||||||| || ||||| ||||||| || || |     
T  30640995 tttattcacttttagtccctatttgcattttaaagggactattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactactt 30641094  T
Q  220 ttacaaactacaatatt 236  Q
    |||||||||| ||||||    
T  30641095 ttacaaactaaaatatt 30641111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 31994684 - 31994811
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatag 210  Q
    |||||||  ||||||||| ||||| |||| ||||||||||||||||||||| ||||||| | || |||| ||||||||||  |||| ||||| ||||| |    
T  31994684 ctacaaaaaatttattcatttttaatcccaatttgcattttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattg 31994783  T
Q  211 agattattcttacaaactacaatattat 238  Q
     || |||||||||||| |||||||||||    
T  31994784 ggactattcttacaaattacaatattat 31994811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 24490520 - 24490638
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgt----aaaatgttttaaaaatagagattat 217  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| |    ||||     | ||||||| ||||||    
T  24490520 ttattcacttttagtccctatttgcattttatagagactattttagaggactaaaagtatccattttttattaaaaaaaaaaaatcaaaatagggattat 24490619  T
Q  218 tcttacaaactacaatatt 236  Q
    |||||||||||||||||||    
T  24490620 tcttacaaactacaatatt 24490638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 6191285 - 6191170
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattctt 221  Q
    ||||||||||||||| | |||||| |||||||||  |||| ||||||||||||||  ||| |||||||||||||| ||||| ||||||  || |||||||    
T  6191285 ttattcacttttagttcttatttgtattttataga-actattttggagaactaaacatattcattttttgtaaaaagttttcaaaatacggactattctt 6191187  T
Q  222 acaaactacaatattat 238  Q
    ||||| |||||||||||    
T  6191186 acaaagtacaatattat 6191170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 29242513 - 29242646
Alignment:
Q  103 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggac---tagtttggagaactaaaagtatccattttttgtaaaatgt 199  Q
    |||||||| ||||||  | |||||||||||||| |||||||||||||||||||||||   || | ||| | |||||||||||| ||||||||||||| |     
T  29242513 tttagtccttacaaaaaaattattcacttttagcccctatttgcattttatagggactattattgtgggggactaaaagtatcgattttttgtaaaaag- 29242611  T
Q  200 tttaaaaatagagattattcttacaaactacaatat 235  Q
      | ||||||| || ||||||||||||||| |||||    
T  29242612 -gtcaaaatagggactattcttacaaactataatat 29242646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 855752 - 855648
Alignment:
Q  136 tccctatttgcattttatagggactagtttgg-----agaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaactac 230  Q
    |||||||||||||||||||||||||| |||||     || ||||||| ||| |||||||||||||| ||||| ||||||  || ||||| ||||||||||    
T  855752 tccctatttgcattttatagggactattttggtctggaggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactac 855653  T
Q  231 aatat 235  Q
    |||||    
T  855652 aatat 855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 27694475 - 27694574
Alignment:
Q  111 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatag 210  Q
    |||||||  ||||||||||||||| ||||||||  ||||||||||||| || || | || ||||||| |||| ||||||||||||| ||||| |||||||    
T  27694475 ctacaaaaaatttattcacttttaatccctattcacattttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatag 27694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 434511 - 434598
Alignment:
Q  141 atttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattcttacaaact 228  Q
    |||||||||||||||| |||| ||||||| || |||| ||||||||||||  |||| ||||| |||| |  || ||||||||||||||    
T  434511 atttgcattttataggaactattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaact 434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 36774162 - 36774112
Alignment:
Q  146 cattttatagggactagtttggagaactaaaagtatccattttttgtaaaa 196  Q
    ||||||||||| |||| |||| |||||||||| ||||||| ||||||||||    
T  36774162 cattttataggaactattttgaagaactaaaaatatccatattttgtaaaa 36774112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 16894 - 16999
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||| ||||||| |||||| ||||| ||||||| || ||||||    
T  16894 tttattcacttttagtccctatttgtattttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattct 16993  T
Q  221 tacaaa 226  Q
    ||||||    
T  16994 tacaaa 16999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 253697 - 253831
Alignment:
Q  101 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgtt 200  Q
    ||||||||| |||||||  | ||||||| ||||| || |||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||||   |    
T  253697 aatttagtctctacaaaaaaattattcatttttaatctctatctgcattttatagggactattttggaggattaaaagtatccattttttgtaaaaaagt 253796  T
Q  201 ttaaaaatagagattattcttacaaactacaatatt 236  Q
    || |||||||||| ||| ||||||||||| ||||||    
T  253797 tt-aaaatagagactatccttacaaactataatatt 253831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 33458 - 33523
Alignment:
Q  143 ttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaat 208  Q
    |||| ||||||| ||| || ||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  33458 ttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttataaaaat 33523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 152141 - 152258
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattattct 220  Q
    |||| ||||||||||||| |||||||||||||||| ||||| |||| |  ||||||| ||| ||||||||| || | ||||||||||||| || ||||||    
T  152141 tttactcacttttagtccttatttgcattttatagagactattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattct 152240  T
Q  221 tacaaactacaatattat 238  Q
    ||||| ||||||||||||    
T  152241 tacaatctacaatattat 152258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 48396 - 48514
Alignment:
Q  122 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca--ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||| |||||||||||| ||||| |||||||||| ||||| ||||||  ||||||||||||||  |||||||||||| ||||| |||| || || | |||    
T  48396 ttatccacttttagtccatattttcattttatagagactattttggatgactaaaagtatccattttttttgtaaaaagttttcaaaagagggactgttc 48495  T
Q  220 ttacaaactacaatattat 238  Q
    ||| |||||||||| ||||    
T  48496 ttataaactacaattttat 48514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 3418 - 3352
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||||||||||||||||    
T  3418 attcacttttagtccctatttgcgttttagagggacaattttggaggactaaaagtatccatttttt 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 179 - 113
Alignment:
Q  124 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatccatttttt 190  Q
    |||||||||||||| |||||| ||||||| ||||||||  |||||| ||||||||||||||||||||    
T  179 attcacttttagtctctatttacattttagagggactatcttggaggactaaaagtatccatttttt 113  T

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Target: scaffold0720 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 5440 - 5551
Alignment:
Q  121 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtatcca-ttttttgtaaaatgttttaaaaatagagattattc 219  Q
    |||||||| ||||||||||||||||||||||  |||||||| |||||||     |||||||||| ||||||||| || ||||| ||||||| || || |     
T  5440 tttattcatttttagtccctatttgcattttcaagggactattttggag-----aaagtatccatttttttgtataaagttttcaaaatagggactactt 5534  T
Q  220 ttacaaactacaatatt 236  Q
    |||||||||| ||||||    
T  5535 ttacaaactaaaatatt 5551  T

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Target: scaffold0720; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 7458 - 7495
Alignment:
Q  115 aaattatttattcacttttagtccctatttgcatttta 152  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7458 aaattttttattcatttttagtccctatttgcatttta 7495  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 363064 - 363140
Alignment:
Q  142 tttgcattttatagggactagtttggagaactaaaagtatccattttttgtaaaatgttttaaaaatagagattatt 218  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||| ||||||||||||| ||| ||||||||  |||||||    
T  363064 tttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttctaaaaataaggattatt 363140  T

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