View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_234 (Length: 248)
Name: NF8810A_low_234
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_234 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 28628 - 28404
Alignment:
| Q |
10 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
109 |
Q |
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| T |
28628 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
28529 |
T |
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| Q |
110 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatat |
209 |
Q |
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| T |
28528 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatat |
28443 |
T |
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| Q |
210 |
tattatttaacatgatttctgattgttgtgatttttgtt |
248 |
Q |
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| T |
28442 |
tattatttaacatgatttctgattgttgtgatttttgtt |
28404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 275738 - 275514
Alignment:
| Q |
10 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
109 |
Q |
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| T |
275738 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
275639 |
T |
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| Q |
110 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatat |
209 |
Q |
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| T |
275638 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatat |
275553 |
T |
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| Q |
210 |
tattatttaacatgatttctgattgttgtgatttttgtt |
248 |
Q |
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| T |
275552 |
tattatttaacatgatttctgattgttgtgatttttgtt |
275514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 26396343 - 26396118
Alignment:
| Q |
10 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaa-gaataaaga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26396343 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaaagaataaaga |
26396244 |
T |
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| Q |
109 |
gcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacata |
208 |
Q |
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| T |
26396243 |
gcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacata |
26396158 |
T |
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| Q |
209 |
ttattatttaacatgatttctgattgttgtgatttttgtt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26396157 |
ttattatttaacatgatttctgattgttgtgatttttgtt |
26396118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
51 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
135 |
Q |
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|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
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| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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