View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_235 (Length: 248)
Name: NF8810A_low_235
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_235 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 34955671 - 34955907
Alignment:
| Q |
14 |
tggacatcactcataagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
113 |
Q |
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| T |
34955671 |
tggacatcactcataagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
34955770 |
T |
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| Q |
114 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataatagga |
211 |
Q |
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| T |
34955771 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataatagga |
34955870 |
T |
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| Q |
212 |
agtcatatgccgtatattatatcatttatttctgctg |
248 |
Q |
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| T |
34955871 |
agtcatatgccgtatattatatcatttatttctgctg |
34955907 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
33 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
132 |
Q |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
133 |
caagtttcctggaacctgca |
152 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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