View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_236 (Length: 248)
Name: NF8810A_low_236
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_236 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 31700739 - 31700972
Alignment:
| Q |
9 |
gatatgaagcccaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
108 |
Q |
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| T |
31700739 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
31700838 |
T |
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| Q |
109 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga |
208 |
Q |
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| T |
31700839 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtga |
31700938 |
T |
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| Q |
209 |
-cactatggtctat-tggagtcaatggatactgc |
240 |
Q |
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| T |
31700939 |
ccactatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga-cactatggtctat-tggagtcaatggata |
236 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 31716084 - 31716276
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31716084 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31716183 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga-cactatggtctat-tggagtcaatggata |
236 |
Q |
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| T |
31716184 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31716276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 31721958 - 31722150
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||||||||| |
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| T |
31721958 |
tctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggtacttaaccaaaccagtaaagatcgtccacgcta |
31722057 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga-cactatggtctat-tggagtcaatggata |
236 |
Q |
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| T |
31722058 |
cgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccattatggtcaatgtggagtcaatggata |
31722150 |
T |
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