View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_24 (Length: 427)
Name: NF8810A_low_24
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_24 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 111053 - 110659
Alignment:
| Q |
20 |
catcacgttcttaataataaaaagagtactaaacatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtac |
119 |
Q |
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| T |
111053 |
catcacgttcttaataataaaaagagtactaagcatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtac |
110954 |
T |
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| Q |
120 |
ttcaaaattattcaagtccagaatgacattggtttaaacaaaacattcacttcaaaagaacgaaaaattatgattcattttgacccattcaaaattagcc |
219 |
Q |
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| T |
110953 |
ttcaaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattagcc |
110854 |
T |
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| Q |
220 |
tgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataaagaaatcatagaatcacacaaaccgatttcagcatacact |
319 |
Q |
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| T |
110853 |
tgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataa--aaatcatagaatcacaccaaccgatttcagcatacact |
110756 |
T |
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| Q |
320 |
tatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaatgatgtccatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
110755 |
tatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaaagatttccatc |
110659 |
T |
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