View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_242 (Length: 247)
Name: NF8810A_low_242
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_242 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15608762 - 15608990
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
15608762 |
attcacaaatgagtagcgatatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgtttttggataaacatgatatttttg |
15608861 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
15608862 |
gattcaatgtgttttctctgtctataatt-aactaattgcattggatgaaaacacttcttggtatgatg--tttttttttgctttgacattttttatggg |
15608958 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
15608959 |
atatggttgtgttaattgtttatctttgatgt |
15608990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15628784 - 15629013
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15628784 |
attcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttg |
15628883 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | |||| |
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|
| T |
15628884 |
gattcaatgtgttttctctgtctataatt-aactaattgcattggatgagaacacttcttggtatgatg-tttttattttgctttgacattttttatggg |
15628981 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| |
|
|
| T |
15628982 |
atatggctgtgttaattgtttatctttgatgt |
15629013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15626872 - 15627097
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15626872 |
attcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttg |
15626971 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
15626972 |
gattcaatgtgttttctctgtctataatt-aactaattccattggatgaaaacacttcttggtatgatg--tttttttttgctttgacattttttctggg |
15627068 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttga |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
15627069 |
atatctttgtgttaattgtttatctttga |
15627097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15652627 - 15652857
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
15652627 |
attcacaaatgagtaacgatatttttgatactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggttaaacatgatatttttc |
15652726 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
15652727 |
gattcaatgtgttttctctatctataatt-aactaattgcattggatgaaaacacttcttggtatgatgtttttttttttgctttgacatttttgatggg |
15652825 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
15652826 |
atatggttgtgttaattgtttatctttgatgt |
15652857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15640325 - 15640554
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15640325 |
attcccaaatgagtaacgattttcttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttg |
15640424 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
15640425 |
gattcaatatgttttctctgtctataagt-aactaattgcattggatgaaaacacttcttggtatgatg-ttttttttttgctttgacattttttatggg |
15640522 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
15640523 |
atatggttgtgttaattgtttatctttgatgt |
15640554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 15650636 - 15650803
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15650636 |
attcagaaatgagtaacgatatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttg |
15650735 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatg |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15650736 |
gattcaatgtgttttctctgtctataatt-aactaattccattggatgaaaacacttcttggtatgatg |
15650803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15617147 - 15617376
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
15617147 |
attcccaaatgagtaacgattttcttgaaactatgtccaatgataaaaaaattaatgcaaacttactttattttgttttgggataaacatgatatttttg |
15617246 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||| | |||| |
|
|
| T |
15617247 |
gattcaatatgttttctctgtctataagt-aactaattgcattggatgaaaacacttcttggtatgatg-ttttttttttgcattgacattttttatggg |
15617344 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
15617345 |
atattggtgtgttaattgtttatctttgatgt |
15617376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15971591 - 15971365
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||| ||| |||||||||||| ||||| |
|
|
| T |
15971591 |
attcacaaatgagtaacaatatttttgaaactatatccagtgatccaaaaattaatgcaaacttacttaattttgtgctggcataaacatgatatttttg |
15971492 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||| || |||||||| ||||||||||| | ||||||||| | |||||| |
|
|
| T |
15971491 |
ttttcaatgtgttttctttgtctataatt-aactaattatattaaatagaaacactttttggtatgatg----tttttttgttttgacattgtttgtggg |
15971397 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
15971396 |
atatggttgtgttaattgtttatctttgatgt |
15971365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15990358 - 15990232
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
||||| || |||||||| |||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15990358 |
attcaaaagtgagtaacaatatttttgaaactgtatccaatgatccaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttg |
15990259 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataa |
126 |
Q |
| |
|
|||||||||||||| || ||||||||| |
|
|
| T |
15990258 |
gattcaatgtgtttcctttgtctataa |
15990232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12067988 - 12067764
Alignment:
| Q |
1 |
attcacaaatgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttg |
99 |
Q |
| |
|
||||| ||||||||| |||||||||||||| || ||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
12067988 |
attcagaaatgagtatggatatttttgaaaccatttccaatgatccaaatattaatgcaaacttacttcatcttgttttgggataaaaatgatatttttt |
12067889 |
T |
|
| Q |
100 |
gattcaatgtgttttctctgtctataattaaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnnngctttgacattttatgtggg |
199 |
Q |
| |
|
||||| ||||||||||||||| || ||| || |||||||||||||| ||||||||||||||||| || ||||||||| ||| | |||| |
|
|
| T |
12067888 |
gattc--tgtgttttctctgtcaattatt-aatgaattgcattggatggaaacacttcttggtatgttg----tttttttgctttgacaatttttatggg |
12067796 |
T |
|
| Q |
200 |
atattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |
|
|
| T |
12067795 |
atatggttgtggtaattgtttatctttgatgt |
12067764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 12063170 - 12063056
Alignment:
| Q |
42 |
gatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgata-ttttggattcaatgtgttttctctgtctataattaaactaattgca |
140 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||| |||| ||| || |
|
|
| T |
12063170 |
gatccaaaaattaatgcagacttacttcattttgttttgggataaacatgatatttttggattcaatgtgctttgtttgtctataatt-aacttattaca |
12063072 |
T |
|
| Q |
141 |
ttggatgaaaacactt |
156 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
12063071 |
ttggatggaaacactt |
12063056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 12138814 - 12138893
Alignment:
| Q |
9 |
atgagtaacgatatttttgaaactatgtccaacgatcaaaaaattaatgcaaacttacttcattttgttttgggataaac |
88 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||| ||| |||| ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
12138814 |
atgagcaacgatatttttgaaactacatccaatgatccaaatattactgctaacttgcttcattttgttttaggataaac |
12138893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 15990160 - 15990109
Alignment:
| Q |
180 |
gctttgacattttatgtgggatattgttgtgttaattgtttatctttgatgt |
231 |
Q |
| |
|
||||||||||| | |||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
15990160 |
gctttgacattgtttgtgagatatggttatgttaattgtttatctttgatgt |
15990109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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