View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_244 (Length: 246)
Name: NF8810A_low_244
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_244 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 55161458 - 55161676
Alignment:
| Q |
8 |
attcaattcaattcaattcatgttgttgttgttttgtaacttataa-ttgtagtattcttctatatgacagacaaatgtcatatatagaactgacatgca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55161458 |
attcaattcaattcaattcatgttgttgttgttttgtaacttataacttgtagtattcttctatatgacagacaaatgtcatatatagaactgacatgca |
55161557 |
T |
|
| Q |
107 |
tagttgagacttt-gacagtgcaaagagcatccagagaagccactttacggaggaggagttttcaatatcaaggacaagggtaatgctgttaacaacacc |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55161558 |
tagttgagacttttgacagtgcaaagagcatccagagaagccactttacggaggaggagttttcaatatcaaggacaagggtaatgctgttaacaacacc |
55161657 |
T |
|
| Q |
206 |
aacatcaacatgccttctt |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
55161658 |
aacatcaacatgccttctt |
55161676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University