View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_246 (Length: 246)
Name: NF8810A_low_246
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_246 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 29419099 - 29418865
Alignment:
| Q |
12 |
ggacatcatcaatgttatgattactctaacataatatcaacaaagtcataaaaaatgagtagaagtaacatcagatattagtggaaggtgttggccattg |
111 |
Q |
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| T |
29419099 |
ggacatcatcaatgttgtgattactctaacactatgtcaacaaagtcataaaaaatgagtagaagtaacatcagatattagtggaaggtgttggccattg |
29419000 |
T |
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| Q |
112 |
tagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataactagagctgaattacaattcattgatataaattcttagt |
211 |
Q |
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| T |
29418999 |
tagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataactagagctgaattacaattcattgatataaattcttagt |
29418900 |
T |
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| Q |
212 |
ggaggagttctctcagaagcaaggacacctttgtg |
246 |
Q |
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| T |
29418899 |
ggaggagttctctcagaagcaaggacacctttgtg |
29418865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 29457257 - 29457143
Alignment:
| Q |
96 |
aaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataactagagctgaattacaattcatt |
195 |
Q |
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| T |
29457257 |
aaggtgttggtcattgtagataatatcattatcttaggagttcacttttattaagaatttgaattatagatctatgattagatttgaattacaatccgtt |
29457158 |
T |
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| Q |
196 |
gatataaattcttag |
210 |
Q |
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| T |
29457157 |
gatatgaattcttag |
29457143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 24337772 - 24337602
Alignment:
| Q |
76 |
gtaacatcagatattagtggaaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataacta |
175 |
Q |
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| T |
24337772 |
gtaacatcagatattaatggaaggtgttgctcattgtagattatataattatcttaagagttatctttaattagcaatttgaattatagatctacaatca |
24337673 |
T |
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| Q |
176 |
gagctgaattacaattcattgatataaattcttagtggaggagttctctcagaagcaaggacacctttgtg |
246 |
Q |
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| T |
24337672 |
gatctgaattacaatccattgatattaattcttagtggaggacttctctgagaagcaaggacacctttgtg |
24337602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 24412365 - 24412195
Alignment:
| Q |
76 |
gtaacatcagatattagtggaaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataacta |
175 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| |||||| || ||||||||||| ||||| |||||||||||||||| ||||| | |
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| T |
24412365 |
gtaacatcagatattaacggaaggtgttgctcattgtagattatataattatcataagagttatctttaattagcaatttgaattatagatctataatca |
24412266 |
T |
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| Q |
176 |
gagctgaattacaattcattgatataaattcttagtggaggagttctctcagaagcaaggacacctttgtg |
246 |
Q |
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| T |
24412265 |
gatctcaattgcaatccattgatataatttcttagtggaggacctctctaagaagcaaggatacttttgtg |
24412195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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