View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_247 (Length: 246)
Name: NF8810A_low_247
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_247 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 27643059 - 27643284
Alignment:
| Q |
16 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
115 |
Q |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
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| Q |
116 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
215 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
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| Q |
216 |
atgaagcccatattcctccacaatca |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27643259 |
atgaagcccatattcctccacaatca |
27643284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 50247819 - 50247607
Alignment:
| Q |
29 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
128 |
Q |
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|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
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| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
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| Q |
129 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagcccatat |
228 |
Q |
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| T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatat |
50247620 |
T |
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| Q |
229 |
tcctccacaatca |
241 |
Q |
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| ||| ||||||| |
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| T |
50247619 |
ttctctacaatca |
50247607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 50254962 - 50254745
Alignment:
| Q |
23 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
122 |
Q |
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||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
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| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
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| Q |
123 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagc |
222 |
Q |
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| T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagt |
50254763 |
T |
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| Q |
223 |
ccatattcctccacaatc |
240 |
Q |
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||||| |||||||||||| |
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| T |
50254762 |
ccatactcctccacaatc |
50254745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27646250 - 27646328
Alignment:
| Q |
1 |
aatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
79 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27646250 |
aatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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