View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_250 (Length: 246)
Name: NF8810A_low_250
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_250 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 29056512 - 29056295
Alignment:
| Q |
21 |
agaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaattttgaa |
120 |
Q |
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| T |
29056512 |
agaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaattttgaa |
29056413 |
T |
|
| Q |
121 |
aagtgattttgtacaatataagctgtaacaaacaggccctttatatttgttgttggtttcattattgttttttacaaaatatgccgtaaaaacaggttct |
220 |
Q |
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| T |
29056412 |
aagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgtaaaaacaggctct |
29056313 |
T |
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| Q |
221 |
ttatatttgttattggtt |
238 |
Q |
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|||||||||||||||||| |
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| T |
29056312 |
ttatatttgttattggtt |
29056295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 29056323 - 29056280
Alignment:
| Q |
150 |
aaacaggccctttatatttgttgttggtttcattattgtttttt |
193 |
Q |
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| T |
29056323 |
aaacaggctctttatatttgttattggtttcatgattgtttttt |
29056280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
44 |
catttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
113 |
Q |
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| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 21479534 - 21479629
Alignment:
| Q |
34 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatg-aaaattttgaaaagtgatt |
128 |
Q |
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| T |
21479534 |
aacagcttctcatttgaagctgtttttagattttttttagattctgatttttttaaaaagctgtaacaaatggatgcaaaattcttaaaagtgatt |
21479629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 42429723 - 42429792
Alignment:
| Q |
34 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaa |
103 |
Q |
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| T |
42429723 |
aacagcttctcatttgaaactgtttttagattatttttagattctgatttttttaaaaagctgtaacaaa |
42429792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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