View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_252 (Length: 246)

Name: NF8810A_low_252
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_252
NF8810A_low_252
[»] chr1 (7 HSPs)
chr1 (23-231)||(37318350-37318558)
chr1 (112-206)||(7988453-7988548)
chr1 (118-160)||(30847728-30847771)
chr1 (112-161)||(19637775-19637825)
chr1 (112-171)||(26777379-26777440)
chr1 (112-154)||(33202918-33202960)
chr1 (124-175)||(3921660-3921712)
[»] chr4 (6 HSPs)
chr4 (116-181)||(45267857-45267922)
chr4 (118-206)||(5654599-5654687)
chr4 (112-161)||(56049884-56049933)
chr4 (118-161)||(18513249-18513293)
chr4 (124-175)||(21345547-21345599)
chr4 (120-160)||(32915616-32915656)
[»] chr6 (6 HSPs)
chr6 (112-181)||(17168881-17168951)
chr6 (112-162)||(993011-993061)
chr6 (118-175)||(9024184-9024242)
chr6 (112-149)||(18612641-18612678)
chr6 (118-151)||(31563807-31563840)
chr6 (118-162)||(34547214-34547258)
[»] chr5 (7 HSPs)
chr5 (120-162)||(5399926-5399968)
chr5 (112-161)||(38749565-38749615)
chr5 (112-161)||(28296335-28296385)
chr5 (111-176)||(28322233-28322299)
chr5 (112-161)||(14818305-14818354)
chr5 (120-175)||(16881129-16881185)
chr5 (112-140)||(18145305-18145333)
[»] chr7 (8 HSPs)
chr7 (112-167)||(36314629-36314685)
chr7 (118-161)||(3749260-3749303)
chr7 (112-161)||(21247738-21247788)
chr7 (116-161)||(32855361-32855407)
chr7 (115-181)||(1334902-1334970)
chr7 (118-169)||(12278834-12278886)
chr7 (118-161)||(30606072-30606116)
chr7 (118-161)||(38134414-38134458)
[»] chr3 (6 HSPs)
chr3 (112-167)||(11093571-11093627)
chr3 (125-167)||(29039695-29039737)
chr3 (118-175)||(41319318-41319376)
chr3 (113-150)||(47678860-47678897)
chr3 (118-161)||(12704665-12704709)
chr3 (112-167)||(21478684-21478740)
[»] chr2 (4 HSPs)
chr2 (118-171)||(18570969-18571023)
chr2 (112-161)||(31026702-31026752)
chr2 (126-170)||(10254025-10254070)
chr2 (118-151)||(37402092-37402125)
[»] chr8 (2 HSPs)
chr8 (113-161)||(3508059-3508108)
chr8 (120-167)||(34201056-34201104)
[»] scaffold0004 (1 HSPs)
scaffold0004 (118-154)||(101015-101051)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 37318558 - 37318350
Alignment:
Q  23 tgtctgattggatgatatcgacttgaagaaaaactatgaagcacaaatactcctccaatcaggcgtgtccgagggtcagacaccgacatacaccaacaca 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37318558 tgtctgattggaagatatcgacttgaagaaaaactatgaagcacaaatactcctccaatcaggcgtgtccgagggtcagacaccgacatacaccaacaca 37318459  T
Q  123 tatgattacattgaattaagtcattttttaaattattattagtgttgacgtgtttgtgttcttgtccgactctgtgcttcatagaataaaaataaatttt 222  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37318458 tatgattacattgaattacgtccttttttaaattattatcagtgttgacgtgtatgtgttcttgtccgactctgtgcttcatagaataaaaataaatttt 37318359  T
Q  223 gagaataat 231  Q
    |||||||||    
T  37318358 gagaataat 37318350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 7988453 - 7988548
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtca-ttttttaaattattattagtgttgacgtgtttgtgttcttgtccgactctgtgcttcatag 206  Q
    |||||||||| |||||||||||||||||| |||| ||| |||||||||||| ||||| ||||||||  ||||| |||| || ||| ||||||||||    
T  7988453 acaccaacacttatgattacattgaattatgtcactttcttaaattattatcagtgtcgacgtgttcttgttcgtgtctgagtctatgcttcatag 7988548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 30847728 - 30847771
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt-aaattatta 160  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  30847728 acacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 19637825 - 19637775
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||| ||||||||||||||||||||| | |||||||| ||||||||||||    
T  19637825 acaccgacacatatgattacattgaataatgtcattttcttaaattattat 19637775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 26777379 - 26777440
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttttt--aaattattattagtgttgac 171  Q
    ||||| |||||| |||||||||| ||||||||||||||||  ||||||||||  ||||||||    
T  26777379 acacccacacatgtgattacattcaattaagtcatttttttcaaattattatcggtgttgac 26777440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 33202960 - 33202918
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcattttttaaa 154  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  33202960 acaccaaaacatatgattacattgatttatgtcattttttaaa 33202918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 3921712 - 3921660
Alignment:
Q  124 atgattacattgaattaagtcatttt-ttaaattattattagtgttgacgtgt 175  Q
    ||||||||||||||||| |||||||| | |||||||||||  |||||||||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattattgatgttgacgtgt 3921660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 45267922 - 45267857
Alignment:
Q  116 caacacatatgattacattgaattaagtcattttttaaattattattagtgttgacgtgtttgtgt 181  Q
    ||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||| ||||| ||||    
T  45267922 caacacatatgattacattcaattatgtcatttttaaaatcattactagtgttgatgtgttagtgt 45267857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 5654599 - 5654687
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattattagtgttgacgtgtttgtgttcttgtccgactctgtgcttcatag 206  Q
    |||| |||||||||||||||||| |||||||| | |||||||||| ||||| ||| ||| |||| | |||||||  ||||||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtgct-ttgtccgtgtctgtgcttcatag 5654687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 56049933 - 56049884
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcattttttaaattattat 161  Q
    ||||| |||||||||||||||||||| || ||||||| | ||||||||||    
T  56049933 acaccgacacatatgattacattgaactatgtcatttctcaaattattat 56049884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 18513249 - 18513293
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||    
T  18513249 acacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 21345547 - 21345599
Alignment:
Q  124 atgattacattgaattaagtcatttttt-aaattattattagtgttgacgtgt 175  Q
    ||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||    
T  21345547 atgattacattgagttatgttattttttcaaattattattggtgttgacgtgt 21345599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 32915616 - 32915656
Alignment:
Q  120 acatatgattacattgaattaagtcattttttaaattatta 160  Q
    |||||| |||||||||||||| || ||||||||||||||||    
T  32915616 acatataattacattgaattatgtgattttttaaattatta 32915656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 17168951 - 17168881
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttttt-aaattattattagtgttgacgtgtttgtgt 181  Q
    |||| |||||||||  ||||||||||||| |||||||||| |||||||||| | ||| |||||||||||||    
T  17168951 acacaaacacatatagttacattgaattatgtcattttttcaaattattatcaatgtcgacgtgtttgtgt 17168881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 993011 - 993061
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcattttttaaattattatt 162  Q
    ||||||||||||||| ||||||| |||||  | ||||||||||||||||||    
T  993011 acaccaacacatatgtttacattaaattatattattttttaaattattatt 993061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 9024184 - 9024242
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattattagtgttgacgtgt 175  Q
    ||||||||||||||||||||||| |||||||| | ||||||| ||| |||| |||||||    
T  9024184 acacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgt 9024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 18612678 - 18612641
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt 149  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  18612678 acaccaacacatatgattacattgaattatgacatttt 18612641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 31563807 - 31563840
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt 151  Q
    ||||||||||||||||||||||| ||||||||||    
T  31563807 acacatatgattacattgaattacgtcatttttt 31563840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 34547214 - 34547258
Alignment:
Q  118 acacatatgattacattgaattaagtcattttttaaattattatt 162  Q
    |||||| |||||||||| ||||| ||||||||| |||||||||||    
T  34547214 acacatgtgattacattaaattatgtcatttttcaaattattatt 34547258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 5399968 - 5399926
Alignment:
Q  120 acatatgattacattgaattaagtcattttttaaattattatt 162  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  5399968 acatataattacattgaattatgtcattttttaaattattatt 5399926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 38749565 - 38749615
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttttt-aaattattat 161  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  38749565 acaccaacacatataattacattgaattatgtcattttttcaaattattat 38749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 28296385 - 28296335
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||||||||    
T  28296385 acaccaacacatatgagtacattgaattatgtcattttctcaaattattat 28296335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 28322299 - 28322233
Alignment:
Q  111 tacaccaacacatatgattacattgaattaagtcatttt-ttaaattattattagtgttgacgtgtt 176  Q
    ||||||||||||| |||||||||| |||||| ||||||| | ||||||| | |||||| ||||||||    
T  28322299 tacaccaacacatgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgtt 28322233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 14818305 - 14818354
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcattttttaaattattat 161  Q
    ||||| ||||||||| ||||||||||||| ||||||| | ||||||||||    
T  14818305 acaccgacacatatgtttacattgaattatgtcatttctcaaattattat 14818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 16881185 - 16881129
Alignment:
Q  120 acatatgattacattgaattaagtcatttttt-aaattattattagtgttgacgtgt 175  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||  || |||||||||    
T  16881185 acatatgattacattaaattatgtcattttttcaaattattatgggtattgacgtgt 16881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 18145305 - 18145333
Alignment:
Q  112 acaccaacacatatgattacattgaatta 140  Q
    |||||||||||||||||||||||||||||    
T  18145305 acaccaacacatatgattacattgaatta 18145333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 36314629 - 36314685
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt-ttaaattattattagtgt 167  Q
    |||||||||||||||||||||||||| || |||||||| | |||||||||| |||||    
T  36314629 acaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 3749303 - 3749260
Alignment:
Q  118 acacatatgattacattgaattaagtcattttttaaattattat 161  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||    
T  3749303 acacatctgattgcattgaattatgtcattttttaaattattat 3749260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 21247738 - 21247788
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||||||||| ||||||||||||||||| |||||||| | ||||||||||    
T  21247738 acaccaacacacatgattacattgaattacgtcattttctcaaattattat 21247788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 32855407 - 32855361
Alignment:
Q  116 caacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  32855407 caacacatatgattacattcaattaaatcattttcttaaattattat 32855361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 1334902 - 1334970
Alignment:
Q  115 ccaacacatatgattacattgaattaagtcatttttt--aaattattattagtgttgacgtgtttgtgt 181  Q
    ||||||||||| | |||||||||||| ||||||||||  ||||||||||| |||| || |||| |||||    
T  1334902 ccaacacatataaatacattgaattatgtcatttttttcaaattattattggtgtggaggtgtatgtgt 1334970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 12278886 - 12278834
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattattagtgttg 169  Q
    |||||||| |||||| ||||||| |||||||| |||||||||||| |||||||    
T  12278886 acacatataattacactgaattatgtcattttcttaaattattatcagtgttg 12278834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 30606072 - 30606116
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt-aaattattat 161  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||    
T  30606072 acacatatggttacattgaattatgtcattttttgaaattattat 30606116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 38134414 - 38134458
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 11093627 - 11093571
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttttt-aaattattattagtgt 167  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||||||||| |||||    
T  11093627 acaccaacacatctgattactttgaattatgtcattttttcaaattattatcagtgt 11093571  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 29039737 - 29039695
Alignment:
Q  125 tgattacattgaattaagtcattttttaaattattattagtgt 167  Q
    |||||||||| |||||  |||||||||||||||||||||||||    
T  29039737 tgattacatttaattacatcattttttaaattattattagtgt 29039695  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 41319318 - 41319376
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt-aaattattattagtgttgacgtgt 175  Q
    |||||||  |||||||||||||| |||||||||| ||||||||||| |||| |||||||    
T  41319318 acacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgt 41319376  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 47678897 - 47678860
Alignment:
Q  113 caccaacacatatgattacattgaattaagtcattttt 150  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  47678897 caccaacacatatgattacattcaattatgtcattttt 47678860  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 12704665 - 12704709
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt-aaattattat 161  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||    
T  12704665 acacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 21478740 - 21478684
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcat-tttttaaattattattagtgt 167  Q
    ||||||||||||||||||||||||| ||| ||||| || | ||||||||||| ||||    
T  21478740 acaccaacacatatgattacattgatttatgtcatcttgtgaaattattattggtgt 21478684  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 18571023 - 18570969
Alignment:
Q  118 acacatatgattacattgaattaagtcatttt-ttaaattattattagtgttgac 171  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||  ||||||||    
T  18571023 acacatatgattacattgaattatgtcattttctcaaattattatcggtgttgac 18570969  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 31026752 - 31026702
Alignment:
Q  112 acaccaacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattat 31026702  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 10254070 - 10254025
Alignment:
Q  126 gattacattgaattaagtcatttttta-aattattattagtgttga 170  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||    
T  10254070 gattacattgaattatgtcattttctacaattattattagtgttga 10254025  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 37402092 - 37402125
Alignment:
Q  118 acacatatgattacattgaattaagtcatttttt 151  Q
    ||||||||||||||||||||||| ||||||||||    
T  37402092 acacatatgattacattgaattatgtcatttttt 37402125  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 3508108 - 3508059
Alignment:
Q  113 caccaacacatatgattacattgaattaagtcatttt-ttaaattattat 161  Q
    |||||||||||||||||||||||||||| || ||||| | ||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattat 3508059  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 34201056 - 34201104
Alignment:
Q  120 acatatgattacattgaattaagtcatttt-ttaaattattattagtgt 167  Q
    |||||| |||||||||||||| |||||||| | ||||||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattattagtgt 34201104  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 101051 - 101015
Alignment:
Q  118 acacatatgattacattgaattaagtcattttttaaa 154  Q
    |||||||| |||||||||||||| |||||||||||||    
T  101051 acacatataattacattgaattatgtcattttttaaa 101015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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