View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_257 (Length: 244)
Name: NF8810A_low_257
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_257 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40060968 - 40061206
Alignment:
| Q |
1 |
gtagccatcacaaa-tgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacac |
99 |
Q |
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| T |
40060968 |
gtagccatcacaaaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacac |
40061067 |
T |
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| Q |
100 |
tggacaattgtg--------------ttttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcaca |
185 |
Q |
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| T |
40061068 |
tggacaattgtgttttttaatatatattttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcaca |
40061167 |
T |
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| Q |
186 |
aggccgtaaagctttgtgaggaagcgttaatagctacag |
224 |
Q |
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| T |
40061168 |
aggccgtaaagctttgtgaggaagcgttaatagctacag |
40061206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40086868 - 40087086
Alignment:
| Q |
1 |
gtagccatcacaaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacact |
100 |
Q |
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| T |
40086868 |
gtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagagaaattacact |
40086967 |
T |
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| Q |
101 |
ggacaattgtgttttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagcttt |
200 |
Q |
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| T |
40086968 |
ggacgattggattttttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagcttt |
40087067 |
T |
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| Q |
201 |
gtgaggaagcgttaatagc |
219 |
Q |
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| T |
40087068 |
gtgaagaagcattaatagc |
40087086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40079095 - 40079328
Alignment:
| Q |
1 |
gtagccatcacaaatgtaccactggtaatacatcg-------aagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaa |
93 |
Q |
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| T |
40079095 |
gtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacacgcatagttattttcttttatttagaagagaaa |
40079194 |
T |
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| Q |
94 |
ttacactggacaatt----gtgttt-tttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaagg |
188 |
Q |
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| T |
40079195 |
ttacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagatgtacacaagg |
40079294 |
T |
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| Q |
189 |
ccgtaaagctttgtgaggaagcgttaatagctac |
222 |
Q |
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| T |
40079295 |
ccataaagctttgtgaagaagcactaatagctac |
40079328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
136 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
219 |
Q |
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| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
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