View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_258 (Length: 244)

Name: NF8810A_low_258
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_258
NF8810A_low_258
[»] chr1 (6 HSPs)
chr1 (19-65)||(41105815-41105861)
chr1 (33-65)||(24204766-24204798)
chr1 (35-65)||(22351029-22351059)
chr1 (37-65)||(7651869-7651897)
chr1 (37-65)||(18781995-18782023)
chr1 (37-65)||(19274376-19274404)
[»] scaffold0338 (1 HSPs)
scaffold0338 (33-65)||(5807-5839)
[»] chr8 (4 HSPs)
chr8 (33-65)||(22684255-22684287)
chr8 (34-65)||(9056663-9056694)
chr8 (37-65)||(3875785-3875813)
chr8 (37-65)||(35884336-35884364)
[»] chr5 (3 HSPs)
chr5 (29-65)||(20408341-20408377)
chr5 (36-65)||(41282549-41282578)
chr5 (37-65)||(35342387-35342415)
[»] chr4 (13 HSPs)
chr4 (33-65)||(24622990-24623022)
chr4 (33-65)||(25734519-25734551)
chr4 (34-65)||(28812190-28812221)
chr4 (34-65)||(39995069-39995100)
chr4 (35-65)||(9339422-9339452)
chr4 (36-65)||(11795058-11795087)
chr4 (36-65)||(31208564-31208593)
chr4 (33-65)||(2055098-2055130)
chr4 (37-65)||(23553271-23553299)
chr4 (37-65)||(24458537-24458565)
chr4 (37-65)||(32118911-32118939)
chr4 (33-65)||(33693630-33693662)
chr4 (33-65)||(42273644-42273676)
[»] chr7 (5 HSPs)
chr7 (34-65)||(25801469-25801500)
chr7 (34-65)||(47294558-47294589)
chr7 (34-64)||(45233726-45233756)
chr7 (36-65)||(40851128-40851157)
chr7 (37-65)||(47281029-47281057)
[»] chr6 (6 HSPs)
chr6 (34-65)||(2707666-2707697)
chr6 (27-65)||(2643921-2643959)
chr6 (36-65)||(8178538-8178567)
chr6 (36-65)||(17943243-17943272)
chr6 (36-65)||(30457520-30457549)
chr6 (37-65)||(9382726-9382754)
[»] chr3 (9 HSPs)
chr3 (34-65)||(1448999-1449030)
chr3 (34-65)||(20914051-20914082)
chr3 (34-65)||(20922169-20922200)
chr3 (34-65)||(29677683-29677714)
chr3 (35-65)||(19229257-19229287)
chr3 (37-65)||(10618387-10618415)
chr3 (33-65)||(21564338-21564370)
chr3 (33-65)||(33151932-33151964)
chr3 (29-65)||(34019328-34019364)
[»] chr2 (6 HSPs)
chr2 (36-65)||(771881-771910)
chr2 (36-65)||(12759655-12759684)
chr2 (37-65)||(8899888-8899916)
chr2 (37-65)||(16246489-16246517)
chr2 (37-65)||(41178315-41178343)
chr2 (37-65)||(41500408-41500436)
[»] scaffold0727 (1 HSPs)
scaffold0727 (37-65)||(5392-5420)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 41105815 - 41105861
Alignment:
Q  19 aagttcttcttaacattttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41105815 aagttcttcttaacattttggtcaaatgcatctaaaggtcctttaag 41105861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 24204798 - 24204766
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||    
T  24204798 attttggtcaaatgcatctaaaggtcctttaag 24204766  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 22351029 - 22351059
Alignment:
Q  35 tttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||    
T  22351029 tttggtcaaatgcatctaaaggtcctttaag 22351059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 7651897 - 7651869
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  7651897 tggtcaaatgcatctaaaggtcctttaag 7651869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 18781995 - 18782023
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  18781995 tggtcaaatgcatctaaaggtcctttaag 18782023  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 19274376 - 19274404
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  19274376 tggtcaaatgcatctaaaggtcctttaag 19274404  T

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Target: scaffold0338 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 5839 - 5807
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||    
T  5839 attttggtcaaatgcatctaaaggtcctttaag 5807  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 22684287 - 22684255
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||    
T  22684287 attttggtcaaatgcatctaaaggtcctttaag 22684255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 9056694 - 9056663
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  9056694 ttttggtcaaatgcatctaaaggtcctttaag 9056663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 3875785 - 3875813
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  3875785 tggtcaaatgcatctaaaggtcctttaag 3875813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 35884336 - 35884364
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  35884336 tggtcaaatgcatctaaaggtcctttaag 35884364  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 20408341 - 20408377
Alignment:
Q  29 taacattttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20408341 taacagtttggtcaaatgcatctaaaggtcctttaag 20408377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 41282578 - 41282549
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  41282578 ttggtcaaatgcatctaaaggtcctttaag 41282549  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 35342415 - 35342387
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  35342415 tggtcaaatgcatctaaaggtcctttaag 35342387  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 24622990 - 24623022
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||    
T  24622990 attttggtcaaatgcatctaaaggtcctttaag 24623022  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 25734551 - 25734519
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||||    
T  25734551 attttggtcaaatgcatctaaaggtcctttaag 25734519  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 28812190 - 28812221
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  28812190 ttttggtcaaatgcatctaaaggtcctttaag 28812221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 39995069 - 39995100
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  39995069 ttttggtcaaatgcatctaaaggtcctttaag 39995100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 9339452 - 9339422
Alignment:
Q  35 tttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||    
T  9339452 tttggtcaaatgcatctaaaggtcctttaag 9339422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 11795058 - 11795087
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  11795058 ttggtcaaatgcatctaaaggtcctttaag 11795087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 31208564 - 31208593
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  31208564 ttggtcaaatgcatctaaaggtcctttaag 31208593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 2055098 - 2055130
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||| ||||||||||||||||||||||||||||    
T  2055098 atttaggtcaaatgcatctaaaggtcctttaag 2055130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 23553299 - 23553271
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  23553299 tggtcaaatgcatctaaaggtcctttaag 23553271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 24458537 - 24458565
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  24458537 tggtcaaatgcatctaaaggtcctttaag 24458565  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 32118939 - 32118911
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  32118939 tggtcaaatgcatctaaaggtcctttaag 32118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 33693662 - 33693630
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||| ||||||||||    
T  33693662 attttggtcaaatgcatctaaatgtcctttaag 33693630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 42273644 - 42273676
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||| ||||||||||||||||||||||||||||    
T  42273644 atttaggtcaaatgcatctaaaggtcctttaag 42273676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 25801469 - 25801500
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  25801469 ttttggtcaaatgcatctaaaggtcctttaag 25801500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 47294589 - 47294558
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  47294589 ttttggtcaaatgcatctaaaggtcctttaag 47294558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 45233756 - 45233726
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaa 64  Q
    |||||||||||||||||||||||||||||||    
T  45233756 ttttggtcaaatgcatctaaaggtcctttaa 45233726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 40851128 - 40851157
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  40851128 ttggtcaaatgcatctaaaggtcctttaag 40851157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 47281029 - 47281057
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  47281029 tggtcaaatgcatctaaaggtcctttaag 47281057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 2707697 - 2707666
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  2707697 ttttggtcaaatgcatctaaaggtcctttaag 2707666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 2643921 - 2643959
Alignment:
Q  27 cttaacattttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  2643921 cttaacatatgggtcaaatgcatctaaaggtcctttaag 2643959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 8178567 - 8178538
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  8178567 ttggtcaaatgcatctaaaggtcctttaag 8178538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 17943272 - 17943243
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  17943272 ttggtcaaatgcatctaaaggtcctttaag 17943243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 30457549 - 30457520
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  30457549 ttggtcaaatgcatctaaaggtcctttaag 30457520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 9382754 - 9382726
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  9382754 tggtcaaatgcatctaaaggtcctttaag 9382726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 1449030 - 1448999
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  1449030 ttttggtcaaatgcatctaaaggtcctttaag 1448999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 20914082 - 20914051
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  20914082 ttttggtcaaatgcatctaaaggtcctttaag 20914051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 20922200 - 20922169
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  20922200 ttttggtcaaatgcatctaaaggtcctttaag 20922169  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 29677714 - 29677683
Alignment:
Q  34 ttttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||||    
T  29677714 ttttggtcaaatgcatctaaaggtcctttaag 29677683  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 19229287 - 19229257
Alignment:
Q  35 tttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||||    
T  19229287 tttggtcaaatgcatctaaaggtcctttaag 19229257  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 10618387 - 10618415
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  10618387 tggtcaaatgcatctaaaggtcctttaag 10618415  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 21564338 - 21564370
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||| ||||||||||||||||||||||||||||    
T  21564338 atttaggtcaaatgcatctaaaggtcctttaag 21564370  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 33151964 - 33151932
Alignment:
Q  33 attttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||| ||||||||||||||||||||||||||||    
T  33151964 atttaggtcaaatgcatctaaaggtcctttaag 33151932  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 34019328 - 34019364
Alignment:
Q  29 taacattttggtcaaatgcatctaaaggtcctttaag 65  Q
    |||| |||||||||||| |||||||||||||||||||    
T  34019328 taacgttttggtcaaatacatctaaaggtcctttaag 34019364  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 771881 - 771910
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  771881 ttggtcaaatgcatctaaaggtcctttaag 771910  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 12759655 - 12759684
Alignment:
Q  36 ttggtcaaatgcatctaaaggtcctttaag 65  Q
    ||||||||||||||||||||||||||||||    
T  12759655 ttggtcaaatgcatctaaaggtcctttaag 12759684  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 8899916 - 8899888
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  8899916 tggtcaaatgcatctaaaggtcctttaag 8899888  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 16246517 - 16246489
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  16246517 tggtcaaatgcatctaaaggtcctttaag 16246489  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 41178343 - 41178315
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  41178343 tggtcaaatgcatctaaaggtcctttaag 41178315  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 41500408 - 41500436
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  41500408 tggtcaaatgcatctaaaggtcctttaag 41500436  T

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Target: scaffold0727 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 5420 - 5392
Alignment:
Q  37 tggtcaaatgcatctaaaggtcctttaag 65  Q
    |||||||||||||||||||||||||||||    
T  5420 tggtcaaatgcatctaaaggtcctttaag 5392  T

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