View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_261 (Length: 243)
Name: NF8810A_low_261
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_261 |
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| [»] scaffold1075 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 2537 - 2761
Alignment:
| Q |
19 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctggaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2537 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
2636 |
T |
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| Q |
119 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
218 |
Q |
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| T |
2637 |
aattgttaaaaaatccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
2736 |
T |
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| Q |
219 |
acttcaaggtctctacgagaatcaa |
243 |
Q |
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||||||||||||||||||| ||||| |
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| T |
2737 |
acttcaaggtctctacgagcatcaa |
2761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 17006560 - 17006336
Alignment:
| Q |
19 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctggaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17006560 |
catcatgactcttcaacattcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaa |
17006461 |
T |
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| Q |
119 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006460 |
aattgttaaaaattccctcttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
17006361 |
T |
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| Q |
219 |
acttcaaggtctctacgagaatcaa |
243 |
Q |
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|||||||||||||| |||| ||||| |
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| T |
17006360 |
acttcaaggtctcttcgagcatcaa |
17006336 |
T |
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