View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_263 (Length: 243)

Name: NF8810A_low_263
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_263
NF8810A_low_263
[»] chr5 (10 HSPs)
chr5 (2-221)||(20338366-20338592)
chr5 (138-227)||(3436595-3436684)
chr5 (138-227)||(40917751-40917841)
chr5 (51-115)||(4975762-4975826)
chr5 (3-92)||(3436709-3436803)
chr5 (51-93)||(38976236-38976278)
chr5 (46-115)||(38986571-38986640)
chr5 (43-115)||(3296184-3296256)
chr5 (46-105)||(35038728-35038787)
chr5 (2-115)||(40917872-40917990)
[»] chr7 (15 HSPs)
chr7 (138-224)||(49112686-49112772)
chr7 (138-227)||(4267005-4267094)
chr7 (138-227)||(41201942-41202031)
chr7 (161-225)||(17475588-17475652)
chr7 (43-115)||(17475707-17475779)
chr7 (43-115)||(17577435-17577507)
chr7 (161-225)||(17577562-17577626)
chr7 (138-225)||(17511172-17511259)
chr7 (138-225)||(17541955-17542042)
chr7 (43-92)||(17511295-17511344)
chr7 (43-92)||(17541870-17541919)
chr7 (51-90)||(22791285-22791324)
chr7 (46-105)||(23025231-23025290)
chr7 (44-93)||(35709960-35710009)
chr7 (43-92)||(41200289-41200338)
[»] chr3 (8 HSPs)
chr3 (138-225)||(50737822-50737909)
chr3 (138-225)||(50774946-50775033)
chr3 (138-227)||(26844378-26844467)
chr3 (2-92)||(50737934-50738029)
chr3 (2-92)||(50774825-50774920)
chr3 (46-115)||(21389812-21389881)
chr3 (51-104)||(42854272-42854325)
chr3 (45-90)||(21392693-21392738)
[»] chr1 (10 HSPs)
chr1 (161-227)||(45565933-45565999)
chr1 (161-227)||(48470294-48470360)
chr1 (154-227)||(4221043-4221116)
chr1 (141-227)||(17331423-17331509)
chr1 (2-92)||(48470420-48470515)
chr1 (2-115)||(17331282-17331400)
chr1 (45-115)||(45039046-45039116)
chr1 (51-92)||(6501683-6501724)
chr1 (43-92)||(45565826-45565875)
chr1 (43-92)||(49229156-49229204)
[»] chr6 (7 HSPs)
chr6 (140-227)||(12272093-12272180)
chr6 (138-227)||(12076518-12076607)
chr6 (43-92)||(12076634-12076683)
chr6 (43-115)||(17869232-17869304)
chr6 (46-120)||(31472452-31472526)
chr6 (45-90)||(20139282-20139327)
chr6 (45-90)||(22193542-22193587)
[»] chr2 (6 HSPs)
chr2 (163-227)||(9470993-9471057)
chr2 (138-231)||(17920908-17921001)
chr2 (45-115)||(15614124-15614194)
chr2 (2-92)||(9470844-9470939)
chr2 (43-85)||(20922765-20922807)
chr2 (46-83)||(17920856-17920893)
[»] chr4 (9 HSPs)
chr4 (138-227)||(50004885-50004974)
chr4 (141-227)||(16029859-16029945)
chr4 (45-115)||(32767650-32767720)
chr4 (45-120)||(44341262-44341337)
chr4 (45-90)||(43286255-43286300)
chr4 (43-115)||(9455305-9455377)
chr4 (43-91)||(34859052-34859100)
chr4 (43-91)||(1705199-1705247)
chr4 (45-93)||(34030365-34030413)
[»] chr8 (2 HSPs)
chr8 (43-115)||(15243839-15243911)
chr8 (43-91)||(28968259-28968307)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 20338592 - 20338366
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtcc 96  Q
    ||||||| |||||||| || || ||||||||||| || |||     |||||||||||||||||||| ||||||||||||||||  |||||||||||| ||    
T  20338592 cgaataaaatgtagggcctaggccgataaatagcagcccgaattttttcagggatttttagcccggtccgaaaaagcccgaagctcgttagggctagccc 20338493  T
Q  97 gttcgggctaagggcagcctggcagtccg--gnnnnnnnnnccttattttttacactatactagaaggacagcccaaataatcatgttcatttggtattt 194  Q
    |||||| |||||||||||| ||||  |||            | |||||||||| ||   ||| || ||| |||||||||||| ||||||||||| |||||    
T  20338492 gttcggactaagggcagcccggcaacccgcaaaaaaaaaagcgttattttttatacgggactcgacggatagcccaaataattatgttcatttgatattt 20338393  T
Q  195 aagtcattctctcttctaaaaattgta 221  Q
    |||||||||||||||||||||||||||    
T  20338392 aagtcattctctcttctaaaaattgta 20338366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 3436684 - 3436595
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||||||| |  |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3436684 ttattttttacattggactagacggacagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 3436595  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 40917841 - 40917751
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggta-tttaagtcattctctcttctaaaaattgtatataat 227  Q
    ||||||||||||||  ||| || |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  40917841 ttattttttacactggactggacggacagcccaaataattatgttcatttggtactttaagtcattctatcttctaaaaattgtatataat 40917751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 4975826 - 4975762
Alignment:
Q  51 tttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| | ||||||||    
T  4975826 tttttagcccggtccgaaaaagcccggagtccgttagggctagcccattcgggccacgggcagcc 4975762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 3436803 - 3436709
Alignment:
Q  3 gaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    |||||| ||||||||||| || | |||||||||||| |||     || |||| ||||||||||||| ||||||||||||||| ||||| ||||||    
T  3436803 gaataaaatgtagggtcttggccaataaatagctgcccgaatttttttagggctttttagcccggctcgaaaaagcccgaagcccgttcgggcta 3436709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 38976278 - 38976236
Alignment:
Q  51 tttttagcccggcccgaaaaagcccgaagtccgttagggctag 93  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  38976278 tttttagcccggcccgaaaaagcccgtagcccgttagggctag 38976236  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 38986640 - 38986571
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    |||| |||||||||||||||||||||||||| | ||| || ||||| | ||  |||||||||||||||||    
T  38986640 agggctttttagcccggcccgaaaaagcccgcaatccatttgggctggcccactcgggctaagggcagcc 38986571  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 3296184 - 3296256
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| ||||||||||||||| |||||||||| ||  |||||||||||| | | |||||||  ||||||||    
T  3296184 ttcagggctttttagcccggcccaaaaaagcccggagctcgttagggctagcctggtcgggctgcgggcagcc 3296256  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 35038787 - 35038728
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggct 105  Q
    |||| |||||||||||||||| ||||||||   | ||||||||||||| |||||||||||    
T  35038787 agggctttttagcccggcccgtaaaagcccttggcccgttagggctagcccgttcgggct 35038728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 40917990 - 40917872
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtcc 96  Q
    ||||||| |||||||||||| |  |||||||||| || |||     ||||| | ||||||||| |||| |||||||| |||||  |||||||||||| ||    
T  40917990 cgaataaaatgtagggtctgagctgataaatagcagcccgaattttttcagagctttttagcctggcctgaaaaagctcgaagctcgttagggctagccc 40917891  T
Q  97 gttcgggctaagggcagcc 115  Q
     || | |||||||||||||    
T  40917890 atttgagctaagggcagcc 40917872  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 49112686 - 49112772
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatat 224  Q
    ||||||||||||||  ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49112686 ttattttttacacttgactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatat 49112772  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 4267005 - 4267094
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    ||||||||||||||  ||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4267005 ttattttttacactggactggacggacagcccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataat 4267094  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 41201942 - 41202031
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    ||||||||||||||  | | || |||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41201942 ttattttttacactggattggacggacaatccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataat 41202031  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 17475652 - 17475588
Alignment:
Q  161 ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  17475652 ggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatata 17475588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17475779 - 17475707
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  17475779 ttcagggttttttagcccgacccgaaaaagcccgaagctcgttagggctagcccgttcgggctaaggccagcc 17475707  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 17577435 - 17577507
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  17577435 ttcagggttttttagcccgacccgaaaaagcccgaagctcgttagggctagcccgttcgggctaaggccagcc 17577507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 17577562 - 17577626
Alignment:
Q  161 ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  17577562 ggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatata 17577626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 17511259 - 17511172
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    |||||||||||||   ||| || ||||||||||| |||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  17511259 ttattttttacacggaactggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatata 17511172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 17541955 - 17542042
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    |||||||||||||   ||| || ||||||||||| |||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  17541955 ttattttttacacggaactggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatata 17542042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 17511344 - 17511295
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||||||||||||||||||||||||  |||| ||||||    
T  17511344 ttcagggttttttagcccggcccgaaaaagcccgaagctcgttcgggcta 17511295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17541870 - 17541919
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||||||||||||||||||||||||  |||| ||||||    
T  17541870 ttcagggttttttagcccggcccgaaaaagcccgaagctcgttcgggcta 17541919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 22791324 - 22791285
Alignment:
Q  51 tttttagcccggcccgaaaaagcccgaagtccgttagggc 90  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  22791324 tttttagcccggcccgataaagcccgaagcccgttagggc 22791285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 23025231 - 23025290
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggct 105  Q
    |||| |||||||||||||||| ||||||||  || ||||||||||||| |||| ||||||    
T  23025231 agggctttttagcccggcccgtaaaagcccttagcccgttagggctagcccgtccgggct 23025290  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 35709960 - 35710009
Alignment:
Q  44 tcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctag 93  Q
    |||||| |||||||||||||||||||||||||| |  ||||| |||||||    
T  35709960 tcagggctttttagcccggcccgaaaaagcccgcaacccgttcgggctag 35710009  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 41200289 - 41200338
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||||||| ||||||||||||||||  |||| ||||||    
T  41200289 ttcagggttttttagcccggtccgaaaaagcccgaagcacgttcgggcta 41200338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 50737909 - 50737822
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    |||||||||||||   ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50737909 ttattttttacacgggactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 50737822  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 50774946 - 50775033
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 225  Q
    |||||||||||||   ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50774946 ttattttttacacgggactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatata 50775033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 26844467 - 26844378
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||| |||||| ||| || ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26844467 ttatttttgacactagactggacggacaacccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 26844378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 50738029 - 50737934
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||| ||||| ||||||||||| |  |||     ||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  50738029 cgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctcgttagggcta 50737934  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 50774825 - 50774920
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||| ||||| ||||||||||| |  |||     ||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  50774825 cgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctcgttagggcta 50774920  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 21389812 - 21389881
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    |||| ||||| |||| ||||| |||||||||||| ||||||||||||| |||| ||||||| ||| ||||    
T  21389812 agggttttttggcccagcccgtaaaagcccgaagcccgttagggctagcccgtgcgggctacgggtagcc 21389881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 42854325 - 42854272
Alignment:
Q  51 tttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggc 104  Q
    ||||||||||||||  |||||||||| ||||||||||| |||| ||||||||||    
T  42854325 tttttagcccggcctaaaaaagcccggagtccgttaggactagcccgttcgggc 42854272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 21392693 - 21392738
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggc 90  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  21392693 cagggctttttggcccggcccgataaagcccgaagcccgttagggc 21392738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 45565933 - 45565999
Alignment:
Q  161 ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45565933 ggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 45565999  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 48470360 - 48470294
Alignment:
Q  161 ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48470360 ggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 48470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 4221043 - 4221116
Alignment:
Q  154 actagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4221043 actagacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttctaaaaattgtatataat 4221116  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 17331423 - 17331509
Alignment:
Q  141 ttttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||||||  ||| || ||||| ||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17331423 ttttttacactggactggacggacaacccacgtaattatgttcatttggtatttaagtcattctctcttttaaaaattgtatataat 17331509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 48470515 - 48470420
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||||||||||| ||||||||||| || |||     ||||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  48470515 cgaataaaatgtagggtctgggccgataaatagcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgaagcccgttcgggcta 48470420  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 17331282 - 17331400
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtcc 96  Q
    ||||||| |||||||| ||||  ||||||||||| |||| |     ||||||| ||||||| | || |||||||||||||||| |||||||||||||  |    
T  17331282 cgaataaaatgtagggcctggaccgataaatagcagctcaagttttttcagggctttttaggctggtccgaaaaagcccgaagcccgttagggctagctc 17331381  T
Q  97 gttcgggctaagggcagcc 115  Q
    |||| ||||||||||||||    
T  17331382 gttcaggctaagggcagcc 17331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 45039046 - 45039116
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||| ||||||||||| |||||||||||||| |  ||||| ||||| | ||| |||||||||||||||||    
T  45039046 cagggttttttagcccgacccgaaaaagcccgcaacccgtttgggctggcccgctcgggctaagggcagcc 45039116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 6501683 - 6501724
Alignment:
Q  51 tttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  6501683 tttttagcccggcccgaaaaagcccgaagcccgtttgggcta 6501724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 45565826 - 45565875
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| ||||||||||||||||||||| || |||| ||||| ||||||    
T  45565826 ttcagggctttttagcccggcccgaaaaaacctgaagcccgttcgggcta 45565875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 49229204 - 49229156
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||| ||||||    
T  49229204 ttcagggctttttagcccg-cccgaaaaagcccgaagcccgttcgggcta 49229156  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 12272180 - 12272093
Alignment:
Q  140 attttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    ||||||||||||  ||| || |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12272180 attttttacactggactggacggacagtccaaataattttgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 12272093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 12076607 - 12076518
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    ||||||||||||||  ||| || ||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  12076607 ttattttttacactggactggacggacaacccaaataattatgttcatttggtatttaagtcatttgctcttctaaaaattgtatataat 12076518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12076683 - 12076634
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12076683 ttcagggctttttaacccggcccgaaaaagcccgaagtccgttagggcta 12076634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17869304 - 17869232
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| |||||||||||||||||||||||||| |  || || ||||| | ||| |||||||||||||||||    
T  17869304 ttcagggttttttagcccggcccgaaaaagcccgcaacccatttgggctggcccgctcgggctaagggcagcc 17869232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 31472526 - 31472452
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcctggca 120  Q
    |||| ||||||||| |||||||||||||| | || |||||| |||||| |||||||||| | |||||||| ||||    
T  31472526 agggctttttagccaggcccgaaaaagccaggagcccgttatggctagcccgttcgggccacgggcagcccggca 31472452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 20139282 - 20139327
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggc 90  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||    
T  20139282 cagggctttttagcccggcccgaaaaagcccggagcccgttcgggc 20139327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 22193587 - 22193542
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggc 90  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||    
T  22193587 cagggctttttagcccggcccgaaaaagcccggagcccgttcgggc 22193542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 9470993 - 9471057
Alignment:
Q  163 acagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9470993 acagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 9471057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 17920908 - 17921001
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataatgaag 231  Q
    ||||||||||||||  ||| || |||||  ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  17920908 ttattttttacactggactggacggacaatccaaatagttatgttcatttggtatttaagtcattctcacttctaaatattgtataaaatgaag 17921001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 15614194 - 15614124
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||| ||||||||||| |||||||||||||| || | ||||||||||| |||||||||| | ||||||||    
T  15614194 cagggctttttagcccgccccgaaaaagcccggagcctgttagggctagcccgttcgggccacgggcagcc 15614124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 9470844 - 9470939
Alignment:
Q  2 cgaataatatgtagggtctgggtcgataaatagctgctcga-----ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggcta 92  Q
    ||||||| ||||||||| |||| ||||||||||| || |||     ||||||| ||||||||||||||||||||| |||||||  |||| ||||||    
T  9470844 cgaataaaatgtagggtttgggccgataaatagcagcccgaattttttcagggctttttagcccggcccgaaaaatcccgaagcacgttcgggcta 9470939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 20922807 - 20922765
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgtt 85  Q
    ||||||| |||||||||||||||||||||||||| || |||||    
T  20922807 ttcagggctttttagcccggcccgaaaaagcccgtagcccgtt 20922765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 17920856 - 17920893
Alignment:
Q  46 agggatttttagcccggcccgaaaaagcccgaagtccg 83  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  17920856 agggctttttagcccggcccgaaaaagcccgcagtccg 17920893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 50004885 - 50004974
Alignment:
Q  138 ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||| |||||  ||| || |||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  50004885 ttatttttgacactggactggacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttttaaaaattgtatataat 50004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 16029859 - 16029945
Alignment:
Q  141 ttttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataat 227  Q
    |||||||||||| ||| |  ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16029859 ttttttacactagactgggcggacaacccaaatagttatgttcattaggtatttaagtcattctctcttctaaaaattatatataat 16029945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 32767650 - 32767720
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||| |||||||||||||||||||||||||| |  |||||| |||||| |||||||||| | ||||||||    
T  32767650 cagggctttttagcccggcccgaaaaagcccggaacccgttaaggctagcccgttcgggccacgggcagcc 32767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 44341262 - 44341337
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcctggca 120  Q
    ||||| |||||||||||||||| ||||||||| |  || || ||||||| ||||| ||||||||||||||| ||||    
T  44341262 cagggctttttagcccggcccgtaaaagcccgtaaccctttcgggctagcccgtttgggctaagggcagcccggca 44341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 43286300 - 43286255
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggc 90  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||    
T  43286300 cagggctttttagcccggcccgaaaaagcccggagcccgttagggc 43286255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 9455377 - 9455305
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| ||||||||  |||||||||||| ||| || ||||||||||| | | |||||||||| ||||||||    
T  9455377 ttcagggctttttagctgggcccgaaaaaggccgtagcccgttagggctggccagttcgggctacgggcagcc 9455305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 34859100 - 34859052
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggct 91  Q
    ||||||| ||||||||||||||| |||||||||| || |||||||||||    
T  34859100 ttcagggctttttagcccggcccaaaaaagcccgtagcccgttagggct 34859052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 1705247 - 1705199
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggct 91  Q
    ||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  1705247 ttcagggctttttagcccggcccgaaaaagctcgtagcccgttcgggct 1705199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 34030365 - 34030413
Alignment:
Q  45 cagggatttttagcccggcccgaaaaagcccgaagtccgttagggctag 93  Q
    ||||| ||||| |||||||||| |||||||||||| || ||||||||||    
T  34030365 cagggctttttggcccggcccgtaaaagcccgaagcccattagggctag 34030413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 15243839 - 15243911
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggctagtccgttcgggctaagggcagcc 115  Q
    ||||||| |||||||||||| |||  |||||||| || ||||| ||||||| |||  ||||||||||||||||    
T  15243839 ttcagggctttttagcccggaccgttaaagcccgtagcccgtttgggctagcccgcacgggctaagggcagcc 15243911  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 28968259 - 28968307
Alignment:
Q  43 ttcagggatttttagcccggcccgaaaaagcccgaagtccgttagggct 91  Q
    ||||||| ||||||||||||||| |||||||||| || |||||||||||    
T  28968259 ttcagggctttttagcccggcccaaaaaagcccgtagcccgttagggct 28968307  T

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