View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_264 (Length: 243)
Name: NF8810A_low_264
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_264 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 8884233 - 8884442
Alignment:
| Q |
15 |
ggacatcaaaaacactcataaagacaccgctc-aacctagggctgccaccaaaaaccaatacnnnnnnnctaaccactaacaccaaatacacaacctaac |
113 |
Q |
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||||| |||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
8884233 |
ggacaacaaaaacactcataaagacaccaccccaacctagggctgccaccaaaaaccaatacaaaaaaactaaccaccaacaccaaatacacaacctaac |
8884332 |
T |
|
| Q |
114 |
ctcctcacaacaatataaaccaaacttgtgccaaatcatcaactccatcgagaatggtcatcaaaacaagatccaaactcttatctccctctagtcacac |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8884333 |
ctcctcacaacaacataaaccaaacttgtgccaaatcattaactccatcgagaatggtcatcaaaacaagatccaaactcttatctccctctagtcacac |
8884432 |
T |
|
| Q |
214 |
caaaacccct |
223 |
Q |
| |
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|||||||||| |
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| T |
8884433 |
caaaacccct |
8884442 |
T |
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