View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_269 (Length: 243)
Name: NF8810A_low_269
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_269 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 12559091 - 12559319
Alignment:
| Q |
11 |
tgagatgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559091 |
tgagatgaaggatcttggaccatttagttactttatagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
12559190 |
T |
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| Q |
111 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |
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| T |
12559191 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttactcctcaaggtgatactttacttaatgatg |
12559290 |
T |
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| Q |
211 |
ctactctatattggcatctcgtaggtagt |
239 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
12559291 |
ctactctttattggcatctcgtaggtagt |
12559319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 53015973 - 53015743
Alignment:
| Q |
11 |
tgagatgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
110 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| || |
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| T |
53015973 |
tgagatgaaggatctttgaccattaagttactttctagggcttgaagtatcatcttcgagtgatggcttgtttctctcacaggctaagtatgcttcttat |
53015874 |
T |
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| Q |
111 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatg |
210 |
Q |
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|||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||| |
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| T |
53015873 |
cttgtctctcgagcaggtctcagtgatagtaaaattgaacacactcctcttgaaccaaacgttcgatttactcctcaagatggtactttacttaatgatg |
53015774 |
T |
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| Q |
211 |
ctactctatattggcatctcgtaggtagtct |
241 |
Q |
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||||||| |||||||| |||||||||||||| |
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| T |
53015773 |
ctactctttattggcagctcgtaggtagtct |
53015743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 16504237 - 16504469
Alignment:
| Q |
11 |
tgagatgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
110 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
16504237 |
tgagatgaaggatcttggaccattaagttattttctagggcttgaagtattatcttcgagtgatggtttgttcctctcacaggctaagtatgcttctgat |
16504336 |
T |
|
| Q |
111 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatg |
210 |
Q |
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|||||||||| ||||||| ||| |||| |||||||||||||||||||||| || | | ||| |||||| ||||||||||| ||||||||| ||||||| |
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| T |
16504337 |
cttgtctctcgagcaggtttcattgattgtaaaatcgaacacactcctcttgaatccgacgtttgatttactcctcaagatggtactttacttaatgatg |
16504436 |
T |
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| Q |
211 |
ctactctatattggcatctcgtaggtagtctga |
243 |
Q |
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||||||| ||| |||| |||||||||||||||| |
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| T |
16504437 |
ctactctttatcggcaactcgtaggtagtctga |
16504469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 29992191 - 29992418
Alignment:
| Q |
15 |
atgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgatcttg |
114 |
Q |
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|||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29992191 |
atgaaggatcttggaccattaagttactttttgggg-ttgaagtattatcttcgagtgatggcttgtttctctcacaggctaagtatgcttctgatcttg |
29992289 |
T |
|
| Q |
115 |
tctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatgctac |
214 |
Q |
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|||||| || |||||||| |||| ||||||||||||||||| |||| || |||| |||||||||| |||| |||||| |||||||| |||||| |||| |
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| T |
29992290 |
tctctcgagaaggtctcactgattgtaaaatcgaacacactcttcttgaatcaaacgttcgatttactccttaagatggcactttacttaatgatactac |
29992389 |
T |
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| Q |
215 |
tctatattggcatctcgtaggtagtctga |
243 |
Q |
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||| ||| || |||||||||||||||| |
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| T |
29992390 |
tctttatcaacaactcgtaggtagtctga |
29992418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 24430414 - 24430190
Alignment:
| Q |
11 |
tgagatgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||| | | ||| || ||||||||| |||||||||||||||||||| |
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| T |
24430414 |
tgagatgaaggatcttggaccattaagttattttttggggcttgaagttttatcttccattgatggtttatttctctcaaaggctaagtatgcttctgat |
24430315 |
T |
|
| Q |
111 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatg |
210 |
Q |
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|||||||||| ||||||||||| |||| |||||| || |||||||||||| ||||||||||||||||| ||||||||||| ||| ||||| | |||| |
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| T |
24430314 |
cttgtctctcgagcaggtctcactgattgtaaaattgagcacactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatg |
24430215 |
T |
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| Q |
211 |
ctactctatattggcatctcgtagg |
235 |
Q |
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| ||||||||| | || |||||||| |
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| T |
24430214 |
caactctatatcgtcaactcgtagg |
24430190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 40124449 - 40124217
Alignment:
| Q |
11 |
tgagatgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgat |
110 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | |||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
40124449 |
tgagatgaaggatcttgaaccattaagttactttttggggcttgaagcattatcttcgaatgatgacttgtttctctcacaggctaagtatgcttctgat |
40124350 |
T |
|
| Q |
111 |
cttgtctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatg |
210 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||| |||||| |||| |||| || ||| ||||| ||||||||||| ||||||||| |||||| |
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| T |
40124349 |
cttgtctctcaagcaggtctcacagattgtaaaatcgaatacactcgtcttgaacccaacattcaatttactcctcaagatggtactttactcgatgatg |
40124250 |
T |
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| Q |
211 |
ctactctatattggcatctcgtaggtagtctga |
243 |
Q |
| |
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||||||| ||||||||| | ||||||||||||| |
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| T |
40124249 |
ctactctttattggcattttgtaggtagtctga |
40124217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 17411949 - 17411747
Alignment:
| Q |
15 |
atgaaggatcttggaccatttagttactttctagggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgatcttg |
114 |
Q |
| |
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|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||| |
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| T |
17411949 |
atgaaggatcttggaccattaagttactttttggggcttgaagtattatcttcgagtgatggcttatttctctcataggctaagtatgcttctgatcttg |
17411850 |
T |
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| Q |
115 |
tctctctagcaggtctcaatgatactaaaatcgaacacactcctcttaaaccaaatgttcgatttaatcctcaagatgatactttactaaatgatgctac |
214 |
Q |
| |
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|||||| ||||||||||| | || |||||||||||||||||||||| |||| |||||| |||||| || |||||||| ||||||||| ||||||||||| |
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| T |
17411849 |
tctctcgagcaggtctcactaattgtaaaatcgaacacactcctcttgaacccaatgtttgatttactcttcaagatggtactttacttaatgatgctac |
17411750 |
T |
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| Q |
215 |
tct |
217 |
Q |
| |
|
||| |
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|
| T |
17411749 |
tct |
17411747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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