View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_271 (Length: 243)
Name: NF8810A_low_271
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_271 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 24854447 - 24854676
Alignment:
| Q |
4 |
atcataatgcaccttcttcaagcaatagagagaaattattgtttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagaga |
103 |
Q |
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|||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||| ||||||||||| |
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| T |
24854447 |
atcaaaatgcgccttcttcaagcaatggagagaaattattgtttggggaaataatatgctacgattgtataaacagtctgcacaacaatggaaacagaga |
24854546 |
T |
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| Q |
104 |
gcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24854547 |
gcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttg |
24854646 |
T |
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| Q |
204 |
aatg-ataatgcctcggagtatttgttcat |
232 |
Q |
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|||| | ||||||||||| || |||||||| |
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| T |
24854647 |
aatgaaaaatgcctcggactaattgttcat |
24854676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 24537900 - 24537746
Alignment:
| Q |
45 |
tttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctt |
144 |
Q |
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| T |
24537900 |
tttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaatagagagaaccgttgcaacgaagttgtaattgcggttcataaatcta |
24537801 |
T |
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| Q |
145 |
aaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattc |
199 |
Q |
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| T |
24537800 |
aacagccacccatgatgacggtatgtgaatgaactcgacactattttccagattc |
24537746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 24797340 - 24797516
Alignment:
| Q |
19 |
cttcaagcaatagagagaaattattgtttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaa |
118 |
Q |
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||||||||||| ||||| ||||||| ||||||||| ||| |||| |||||||||||| || || |||||| | || | |||| | ||| ||||| | |
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| T |
24797340 |
cttcaagcaatggagaggaattatt---tgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaataaagagaaccgttgcaacga |
24797436 |
T |
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| Q |
119 |
agttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagatt |
198 |
Q |
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| T |
24797437 |
agttgtaattggggttcaaaaatcttaacagccaccaatgatgccggtatgtgaatgaactcgacactattttccagatt |
24797516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 24726599 - 24726707
Alignment:
| Q |
46 |
ttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctta |
145 |
Q |
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||||||||||||||||| | ||||| ||||||||| || |||||| || |||||||| || | | ||||| ||||||||||| || |||| |||| ||| |
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| T |
24726599 |
ttgggaaaataatatgcgaggattgtataaacagtctgcacaacagcgagaacagagaccaccattgcaacgaagttgtaattgcgattcagaaatgtta |
24726698 |
T |
|
| Q |
146 |
aaagccatt |
154 |
Q |
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||||||||| |
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| T |
24726699 |
aaagccatt |
24726707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 24696780 - 24696926
Alignment:
| Q |
45 |
tttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctt |
144 |
Q |
| |
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||||||||||||||| | || || || ||||||||| || |||||| || |||||||| || ||| ||||| |||||||| || ||||||| ||||||| |
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| T |
24696780 |
tttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtagttgcggttcaaaaatctt |
24696879 |
T |
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| Q |
145 |
aaaagccatttatgacgatggtatgtgaatgaattcaacactattttcca |
194 |
Q |
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| T |
24696880 |
acaacccattcttgac---ggcatgtgaatgaattccacaccattatcca |
24696926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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