View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_272 (Length: 243)
Name: NF8810A_low_272
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_272 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 12123760 - 12123990
Alignment:
| Q |
7 |
atataaacgaataagacgttttttctttg-----gtaagttcaaaaggatcaatcaaattggtaaatgaaaagcttacnnnnnnnnn-cattatctttct |
100 |
Q |
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| T |
12123760 |
atataaacgaataagatgttttttcttttctttagtaagttcaaaaggatcaatcaaattgataaatgaagagcttacttttttttttcattatctttct |
12123859 |
T |
|
| Q |
101 |
nnnnnnnnntaaactatttgtattctcaacctcttaactaaattttggtagtttaaaataactagtaaaaagaaagacttaagatattattttatggaga |
200 |
Q |
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| T |
12123860 |
aaaaaaaaataa-ctatttctattctcaacctcttacctaaattttggtagtttaaaataactagtaaaacgaaagacttaagatattattttatggaga |
12123958 |
T |
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| Q |
201 |
ggtctccatcctttttcttgtggtgaatattg |
232 |
Q |
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||||||||||||||||||||| | |||||||| |
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| T |
12123959 |
ggtctccatcctttttcttgttgagaatattg |
12123990 |
T |
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