View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_280 (Length: 242)
Name: NF8810A_low_280
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_280 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 5985319 - 5985096
Alignment:
| Q |
12 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatcgacatttaattttcgga |
111 |
Q |
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| T |
5985319 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatcgacatttaattttcgga |
5985220 |
T |
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| Q |
112 |
agggggtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
211 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5985219 |
agggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
5985120 |
T |
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| Q |
212 |
tgcactcacagtttctgcatatat |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
5985119 |
tgcactcacagtttctgcatatat |
5985096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 5961013 - 5960913
Alignment:
| Q |
135 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagtttctgcatata |
234 |
Q |
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| T |
5961013 |
taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacagtttgtgcatata |
5960914 |
T |
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| Q |
235 |
t |
235 |
Q |
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| |
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| T |
5960913 |
t |
5960913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 5921783 - 5921678
Alignment:
| Q |
135 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaatt-----caccacctcagtgcactcacagtttctgc |
229 |
Q |
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| T |
5921783 |
taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgc |
5921684 |
T |
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| Q |
230 |
atatat |
235 |
Q |
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|||||| |
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| T |
5921683 |
atatat |
5921678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 5949661 - 5949569
Alignment:
| Q |
135 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagtttct |
227 |
Q |
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||||||| ||| ||||||||| || |||||||||||||||||||| |||| |||||| |||| |||||||||| |||| ||||||||||||| |
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| T |
5949661 |
taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagtttct |
5949569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 30080693 - 30080761
Alignment:
| Q |
22 |
atgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacat |
90 |
Q |
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|||||||||||| |||||| || | |||||| || ||||||||||||||||| || |||| ||||||| |
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| T |
30080693 |
atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacat |
30080761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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