View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_285 (Length: 242)
Name: NF8810A_low_285
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_285 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 18085672 - 18085594
Alignment:
| Q |
148 |
attagagtatatttgtaattacagaataaaggcataacatttattctctcatttcttttccagttttcattatttcata |
226 |
Q |
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| T |
18085672 |
attagagtatatttgtaattacagaataaaggcataacatttattctctcatttcttttccaattttcattatttcata |
18085594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 18100533 - 18100459
Alignment:
| Q |
148 |
attagagtatatttgtaattacagaataaaggcataacatttattctctcatttcttttccagttttcattattt |
222 |
Q |
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| T |
18100533 |
attagagtacatttgtaataacagaataaaggcataaagtttattctctcatttcttttccatttttcattattt |
18100459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 18085801 - 18085744
Alignment:
| Q |
19 |
caacaaatacataaagagctaacaaaatgtccacggcagaacagcagaaaagattgtg |
76 |
Q |
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| T |
18085801 |
caacaaatacataaagagctgacaaaatgtccacgacagaacagcaaaaaagattgtg |
18085744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 18100662 - 18100605
Alignment:
| Q |
19 |
caacaaatacataaagagctaacaaaatgtccacggcagaacagcagaaaagattgtg |
76 |
Q |
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|||||||||| |||||||| |||||||||| ||| || ||||||||||||||||||| |
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| T |
18100662 |
caacaaatacgaaaagagctgacaaaatgtctacgacataacagcagaaaagattgtg |
18100605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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