View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_288 (Length: 241)
Name: NF8810A_low_288
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_288 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 1108866 - 1108686
Alignment:
| Q |
53 |
ctatcaagtaaccccgtaatcaagttaatctataactaacttttctcaacttattagctaacttgtagcttaagaaacaaacaaactaaccacttattgt |
152 |
Q |
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| T |
1108866 |
ctatcaagtaaccctgtaatcaagttaatctatcactaacttttctcaacttattagctaacttgtagcttaagaaacaaactaactaaccacttattg- |
1108768 |
T |
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| Q |
153 |
ttatttgaattacaaaactaatactctaaattcctttaaatctgaatcaactaattaagaacttaatctaattaatcaagtcctc |
237 |
Q |
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| T |
1108767 |
---tttgaattacaaaactaatactctaaattcctttaaatctgaatcaactaattaagaacttaatctaattaatcatgtcctc |
1108686 |
T |
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