View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_290 (Length: 241)
Name: NF8810A_low_290
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_290 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 25966716 - 25966932
Alignment:
| Q |
11 |
cagagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgagga |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25966716 |
cagagaccatgtgtatgttgtgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaactcttgagagagattcatggagga |
25966815 |
T |
|
| Q |
111 |
cgagtttaccgccgtaggcttaatgttaagggtggtcagggctgcaggggcatgggcggattttattttatggtgttgtaactgatggatactttttgtt |
210 |
Q |
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||||||||| || || ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25966816 |
cgagtttactgctgtgggcttaatgttaagggtggccagggctgcaagggcatgggctgattttattttatggtgttgtaactgatggataccttttgtt |
25966915 |
T |
|
| Q |
211 |
ttcattttaagtgatgt |
227 |
Q |
| |
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|||||||||||| |||| |
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| T |
25966916 |
ttcattttaagttatgt |
25966932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 32463093 - 32462959
Alignment:
| Q |
11 |
cagagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatg-agttcatttggaagaactcttgagagagattcattgagg |
109 |
Q |
| |
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|||||||||||| |||| ||||||||| |||||||||||||||||| |||||| | |||| |||||||||||||||| || |||||||| ||||| |||| |
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| T |
32463093 |
cagagaccatgtctatggtgtgatgtccagtggtgtgattgcgcaaaggtctcatgaatggagttcatttggaagaagtcctgagagagtttcatggagg |
32462994 |
T |
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| Q |
110 |
acgagtttaccgccgtaggcttaatgttaagggtg |
144 |
Q |
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| T |
32462993 |
acaagtttaccgccgtaggcgtgatgttgagggtg |
32462959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 27575776 - 27575570
Alignment:
| Q |
11 |
cagagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgagga |
110 |
Q |
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|||| |||||||||||| | ||||||| |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
27575776 |
cagaaaccatgtgtatgctctgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaagtcttgagagaggttcatggagga |
27575677 |
T |
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| Q |
111 |
cgagtttaccgccgtaggcttaatgttaagggtggtcagggctgcaggggcatgggcggattttattttatggtgttgtaactgatggatactttttgtt |
210 |
Q |
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||||||||||| |||||||||| |||| ||||||| ||||| ||| ||| | || |||||||||||||||||||||||| ||||||||||||| || |
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| T |
27575676 |
cgagtttaccgtcgtaggcttattgttgagggtgg-caggg--gcaagggaagggattgattttattttatggtgttgtaaccaatggatactttttatt |
27575580 |
T |
|
| Q |
211 |
ttcattttaa |
220 |
Q |
| |
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|||||||||| |
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|
| T |
27575579 |
ttcattttaa |
27575570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 14912573 - 14912704
Alignment:
| Q |
14 |
agaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgaggacga |
113 |
Q |
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||||||||| |||| |||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| | ||||| |||| || || ||||| || |
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| T |
14912573 |
agaccatgtctatgatgtg-tgtccaatggtgtgattgtgcaagggtctcctgaatgagttcatttggaaggagtcttggtagaggtttatggaggatga |
14912671 |
T |
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| Q |
114 |
gtttaccgccgtaggcttaatgttaagggtggt |
146 |
Q |
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|||||||||||||||| | ||||| ||||||| |
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| T |
14912672 |
gtttaccgccgtaggcgtgatgttgtgggtggt |
14912704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 99641 - 99775
Alignment:
| Q |
11 |
cagagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgagga |
110 |
Q |
| |
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|||| ||||||| |||| || ||||| ||||||||||||| |||||||| ||| |||| || |||||||||| ||||||||||| ||||| ||||| |
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| T |
99641 |
cagataccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtttccccaatggattagtttggaagaagtcttgagagaggttcatggagga |
99740 |
T |
|
| Q |
111 |
cgagtttaccgccgtaggcttaatgttaagggtgg |
145 |
Q |
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||||||||||||| |||| || ||||| ||||||| |
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| T |
99741 |
cgagtttaccgccataggtttgatgttgagggtgg |
99775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 99779 - 99835
Alignment:
| Q |
164 |
gggcggattttattttatggtgttgtaactgatggatactttttgttttcattttaa |
220 |
Q |
| |
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|||| |||||||| ||||||||||||||| | |||||| ||||| |||| ||||||| |
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|
| T |
99779 |
gggctgattttatgttatggtgttgtaaccgttggataatttttcttttaattttaa |
99835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 54454170 - 54454106
Alignment:
| Q |
11 |
cagagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttc |
75 |
Q |
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|||||||||||| | |||||||||||| | ||||||||||||||||||||||||| |||| |||| |
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| T |
54454170 |
cagagaccatgtctgtgttgtgatgtccattggtgtgattgcgcaagggtctcctcaatgggttc |
54454106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 11436167 - 11436275
Alignment:
| Q |
34 |
tgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgaggacgagtttaccgccgtaggcttaa |
133 |
Q |
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|||| ||||||||| | |||||||||||| || ||| ||||||||||||| | || | ||||| ||||| |||| || ||||| || ||||||| | | |
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| T |
11436167 |
tgtccagtggtgtggtggcgcaagggtcttctgcatgggttcatttggaaggaatcaagggagaggttcatggagggcgggtttatcgtcgtaggcgtga |
11436266 |
T |
|
| Q |
134 |
tgttaaggg |
142 |
Q |
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||||||||| |
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| T |
11436267 |
tgttaaggg |
11436275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 23148740 - 23148692
Alignment:
| Q |
12 |
agagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggt |
60 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| | ||||||||| |
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|
| T |
23148740 |
agagaccatgtgtatgttgtgatgttcagtggtgtggtgccgcaagggt |
23148692 |
T |
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