View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_296 (Length: 239)
Name: NF8810A_low_296
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_296 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 23378009 - 23378239
Alignment:
| Q |
9 |
atcattctacaatcattatgaagtaataaaaaataaagaaggttggggatgagagttttgtcgaatcaagtctttcattataaccaagagtagcaagaca |
108 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
23378009 |
atcattctacaatcattatgaagtaataaaa-ataaagaaggttggggatgagagttttgtcgaatcaagtctgtcattataaccaagagtaacaagaca |
23378107 |
T |
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| Q |
109 |
ttaagcacattgattgacttctcaatgaacat-aaacatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagt |
207 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23378108 |
ttaagcacattgattgacttctcaatgaatatgtttgatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagt |
23378207 |
T |
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| Q |
208 |
cctcactcttaaatcaccttaaaaccctaaat |
239 |
Q |
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|||| |||||||||||||| |||||||||||| |
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| T |
23378208 |
cctcgctcttaaatcacctcaaaaccctaaat |
23378239 |
T |
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