View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_297 (Length: 239)

Name: NF8810A_low_297
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_297
NF8810A_low_297
[»] chr6 (38 HSPs)
chr6 (120-220)||(4560826-4560926)
chr6 (21-121)||(4575000-4575100)
chr6 (21-121)||(4561196-4561296)
chr6 (120-220)||(4574628-4574729)
chr6 (125-220)||(4490071-4490167)
chr6 (120-203)||(4266877-4266961)
chr6 (22-121)||(4458287-4458386)
chr6 (21-99)||(3172455-3172533)
chr6 (32-121)||(4470495-4470584)
chr6 (135-220)||(4481013-4481098)
chr6 (20-121)||(4481385-4481486)
chr6 (20-102)||(4503724-4503806)
chr6 (39-121)||(4514479-4514561)
chr6 (142-203)||(4602126-4602187)
chr6 (137-203)||(4514850-4514916)
chr6 (120-220)||(4617342-4617443)
chr6 (49-121)||(4299189-4299261)
chr6 (120-203)||(4564048-4564132)
chr6 (137-200)||(3172081-3172144)
chr6 (62-121)||(4266547-4266606)
chr6 (120-220)||(4461443-4461544)
chr6 (151-220)||(4457914-4457983)
chr6 (152-220)||(4504141-4504209)
chr6 (30-121)||(4461815-4461906)
chr6 (39-102)||(4506568-4506631)
chr6 (142-200)||(4626291-4626349)
chr6 (61-102)||(4489735-4489776)
chr6 (64-121)||(4602484-4602541)
chr6 (74-121)||(4259547-4259594)
chr6 (39-109)||(4255979-4256049)
chr6 (61-99)||(4484163-4484201)
chr6 (142-220)||(4585956-4586034)
chr6 (151-220)||(4256354-4256423)
chr6 (151-200)||(4516661-4516710)
chr6 (151-208)||(4568388-4568445)
chr6 (142-203)||(4622479-4622540)
chr6 (150-202)||(4493293-4493345)
chr6 (52-92)||(4568765-4568805)
[»] chr3 (1 HSPs)
chr3 (142-220)||(1281434-1281512)
[»] chr8 (3 HSPs)
chr8 (120-220)||(1674546-1674647)
chr8 (21-121)||(20863183-20863283)
chr8 (137-200)||(20863572-20863635)
[»] chr5 (4 HSPs)
chr5 (120-203)||(24103336-24103420)
chr5 (36-121)||(24103691-24103776)
chr5 (138-203)||(27999829-27999894)
chr5 (74-123)||(24107065-24107114)
[»] chr7 (1 HSPs)
chr7 (138-220)||(3086740-3086822)
[»] scaffold0477 (1 HSPs)
scaffold0477 (142-220)||(4420-4498)
[»] scaffold0288 (2 HSPs)
scaffold0288 (142-220)||(3453-3531)
scaffold0288 (30-119)||(3067-3156)
[»] chr2 (1 HSPs)
chr2 (149-191)||(1351056-1351098)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 4560926 - 4560826
Alignment:
Q  120 ttttctcatctgatttttgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattc 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4560926 ttttctcatctgatttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattc 4560827  T
Q  220 t 220  Q
    |    
T  4560826 t 4560826  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 4575100 - 4575000
Alignment:
Q  21 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 120  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4575100 tgaagtggcagataaatgtcatagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4575001  T
Q  121 t 121  Q
    |    
T  4575000 t 4575000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 4561296 - 4561196
Alignment:
Q  21 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 120  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561296 tgaagtggcagataaatgtcttagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4561197  T
Q  121 t 121  Q
    |    
T  4561196 t 4561196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 4574729 - 4574628
Alignment:
Q  120 ttttctcatctgattttt-gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggatt 218  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  4574729 ttttctcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggatt 4574630  T
Q  219 ct 220  Q
    ||    
T  4574629 ct 4574628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 4490071 - 4490167
Alignment:
Q  125 tcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||   ||||||||||    
T  4490071 tcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaggtattgaatcacccttcaattggtggattct 4490167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 4266877 - 4266961
Alignment:
Q  120 ttttctcatctgatttttg-aaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    |||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  4266877 ttttgtcatctgatttttttaaagaaatttcagatagaggactaatagcaagttggtgtccacaagataaagtgttgaaccaccc 4266961  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 4458386 - 4458287
Alignment:
Q  22 gaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    ||||||| ||||| |||||||||||| ||| |||| ||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  4458386 gaagtggcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttccctt 4458287  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 3172533 - 3172455
Alignment:
Q  21 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaat 99  Q
    |||||| |||||||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  3172533 tgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 4470584 - 4470495
Alignment:
Q  32 ataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    |||||||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||    
T  4470584 ataaatgtcaaagagcttctgctattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattccctt 4470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 4481098 - 4481013
Alignment:
Q  135 tttgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||  ||| |||||||    
T  4481098 tttgaaagaaatttcaaatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaatcggcggattct 4481013  T

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Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 4481486 - 4481385
Alignment:
Q  20 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 119  Q
    ||||||||  |||||||||||| ||||| |||||| | ||  ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||    
T  4481486 atgaagtgacagataaatgtcaaagagcatctgcttttgttatcaatacttcttatgaacttgagagtgatgttatgaattctctctattctatattccc 4481387  T
Q  120 tt 121  Q
    ||    
T  4481386 tt 4481385  T

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Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4503724 - 4503806
Alignment:
Q  20 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 102  Q
    ||||||||| |||||||||||| ||||| || || || || ||||||||||||||||||||||||||||||| ||||||||||    
T  4503724 atgaagtggcagataaatgtcaaagagcctcagccattgttttcaatacttctaatgaacttgagagtgatgctatgaatgct 4503806  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 4514479 - 4514561
Alignment:
Q  39 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    ||||||||||||||||||  | || |||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||    
T  4514479 tcatagagcttctgctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctccctt 4514561  T

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Target: chr6; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 4602187 - 4602126
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  4602187 gaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccaccc 4602126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 4514850 - 4514916
Alignment:
Q  137 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    |||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  4514850 tgaatgaaattgcagatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccaccc 4514916  T

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Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 4617443 - 4617342
Alignment:
Q  120 ttttctcatctgatttttgaaa-gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggatt 218  Q
    ||||||||||||| |||  ||| ||||||  ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||  ||| |||||    
T  4617443 ttttctcatctgagtttacaaatgaaattgcagatagaggcctaatagcaagttggtgtccacaagacaaagtgttgaaccacccttcaatcggaggatt 4617344  T
Q  219 ct 220  Q
    ||    
T  4617343 ct 4617342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 4299189 - 4299261
Alignment:
Q  49 tctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    |||||||| || || ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4299189 tctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttccctt 4299261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 4564132 - 4564048
Alignment:
Q  120 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    |||| |||||||| ||| |||| ||||||| |||||||||  |||| ||||||||||||||||| ||||||||||||||||||||    
T  4564132 ttttgtcatctgagtttgtgaatgaaatttcagatagaggcttaattgcaagttggtgtccacaggagaaagtattgaaccaccc 4564048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 3172144 - 3172081
Alignment:
Q  137 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaacca 200  Q
    |||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  3172144 tgaatgaaatttcagatagaggcctaatagcaagttggtgtccgcaagagaaagtgttgaacca 3172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 4266547 - 4266606
Alignment:
Q  62 tcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4266547 tcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 4266606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 4461544 - 4461443
Alignment:
Q  120 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggatt 218  Q
    |||| |||||||| ||| |||| ||||||| ||||||||| ||||||||||| |||||||| |||||| ||||| |||||||||| |||   ||||||||    
T  4461544 ttttgtcatctgagtttgtgaatgaaatttcagatagaggcctaatagcaagctggtgtccgcaagagcaagtactgaaccacccttcaattggtggatt 4461445  T
Q  219 ct 220  Q
    ||    
T  4461444 ct 4461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 4457983 - 4457914
Alignment:
Q  151 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| |||  ||| |||||||    
T  4457983 gatagaggcttaatagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattct 4457914  T

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Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 4504141 - 4504209
Alignment:
Q  152 atagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||||||  |||||||||||||||||||||| ||||| ||||||||||| |||  ||| |||||||    
T  4504141 atagaggacttgtagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattct 4504209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 4461906 - 4461815
Alignment:
Q  30 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    |||||||||||| |||||||||||| |  | || ||||||||||||||||| || |||||| |||||||||   |||||| ||| |||||||    
T  4461906 agataaatgtcacagagcttctgctgttattttgaatacttctaatgaactcgaaagtgatattatgaatgaactctattttatattccctt 4461815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 4506631 - 4506568
Alignment:
Q  39 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 102  Q
    ||||||||| ||| |||| ||  |||||||||||||||||||||||||| ||||| ||||||||    
T  4506631 tcatagagcctcttctattgttctcaatacttctaatgaacttgagagtaatgttctgaatgct 4506568  T

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Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 4626349 - 4626291
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaacca 200  Q
    ||||||| ||||||||| ||||| ||||| |||||||| |||||||||||| |||||||    
T  4626349 gaaatttcagatagaggcctaatcgcaagctggtgtccgcaagagaaagtactgaacca 4626291  T

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Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 4489735 - 4489776
Alignment:
Q  61 ttcaatacttctaatgaacttgagagtgatgttatgaatgct 102  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  4489735 ttcaatacttctaatgaacttgagagtgatgctatcaatgct 4489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 4602541 - 4602484
Alignment:
Q  64 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    |||||||  |||||||||||||||||||| ||||||||  | ||||||||||||||||    
T  4602541 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttccctt 4602484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 4259547 - 4259594
Alignment:
Q  74 atgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    ||||||||||||||||||| |||||||   ||||||||||||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttccctt 4259594  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 4255979 - 4256049
Alignment:
Q  39 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctatt 109  Q
    ||||||||| |||||||| || || || |||| ||||||||||||||| |||||  |||||||| ||||||    
T  4255979 tcatagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctctctatt 4256049  T

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Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 4484163 - 4484201
Alignment:
Q  61 ttcaatacttctaatgaacttgagagtgatgttatgaat 99  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  4484163 ttcaatacttttaatgaactagagagtgatgttatgaat 4484201  T

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Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 4586034 - 4585956
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||| ||||||||| ||||| ||  ||||||| || |||||| |||||||||||||||| |||   ||||||||||    
T  4586034 gaaatttcagatagaggcctaatcgcgggttggtgcccgcaagagcaagtattgaaccacccttcaattggtggattct 4585956  T

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Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 4256354 - 4256423
Alignment:
Q  151 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    |||||||||||||| |  ||||||||||| |||||| ||||| |||||||| | ||||  ||||||||||    
T  4256354 gatagaggactaatcgagagttggtgtccgcaagagcaagtactgaaccactcttcagttggtggattct 4256423  T

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Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 4516710 - 4516661
Alignment:
Q  151 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaacca 200  Q
    ||||||||  |||||||||| |||||||| ||||||||||| ||||||||    
T  4516710 gatagaggcgtaatagcaagctggtgtccgcaagagaaagtgttgaacca 4516661  T

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Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 4568445 - 4568388
Alignment:
Q  151 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcag 208  Q
    |||||||| | ||||||||| |||||||| |||||| |||| ||||||||||| ||||    
T  4568445 gatagaggccaaatagcaagctggtgtccgcaagagcaagtgttgaaccacccttcag 4568388  T

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Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 4622540 - 4622479
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    ||||||| || |||||| ||||| ||| ||||||||||||||||| ||||| | ||||||||    
T  4622540 gaaatttcaggtagaggcctaatcgcaggttggtgtccacaagaggaagtacttaaccaccc 4622479  T

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Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 4493345 - 4493293
Alignment:
Q  150 agatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacc 202  Q
    ||||||||| ||||| || ||||||||||||||||||||| |  |||||||||    
T  4493345 agatagaggcctaattgctagttggtgtccacaagagaaactgctgaaccacc 4493293  T

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Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 4568805 - 4568765
Alignment:
Q  52 gctatggtattcaatacttctaatgaacttgagagtgatgt 92  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  4568805 gctattgttttcaatacttataatgaacttgagagtgatgt 4568765  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 1281512 - 1281434
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||||||    
T  1281512 gaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattct 1281434  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 1674647 - 1674546
Alignment:
Q  120 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggatt 218  Q
    |||| |||||||| ||| |||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||| |||  ||| |||||    
T  1674647 ttttgtcatctgagtttatgaaagaaatttcagatagaggcctaatatcaaattggtgtccacaagagaaagtgttgaaccacccttcaatcggcggatt 1674548  T
Q  219 ct 220  Q
    ||    
T  1674547 ct 1674546  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 20863183 - 20863283
Alignment:
Q  21 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 120  Q
    |||||| | ||||| || ||| ||||| |||||||| || ||||||||||  ||||| |||||||||||||||||||||| | |||||||||||||||||    
T  20863183 tgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttccct 20863282  T
Q  121 t 121  Q
    |    
T  20863283 t 20863283  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 20863572 - 20863635
Alignment:
Q  137 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaacca 200  Q
    |||| ||||||| ||||||||| ||||| || |||||||||||||||||||| || ||||||||    
T  20863572 tgaatgaaatttcagatagaggcctaatcgcgagttggtgtccacaagagaaggtgttgaacca 20863635  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 24103420 - 24103336
Alignment:
Q  120 ttttctcatctgatttttg-aaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    |||| |||||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  24103420 ttttgtcatctgatttttttaaagaagtttcagatagaggactaatagcaagttggtgtccacaagataaagtgttaaaccaccc 24103336  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 24103776 - 24103691
Alignment:
Q  36 atgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 121  Q
    |||||| ||||| ||| |||| ||  ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24103776 atgtcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 24103691  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 27999829 - 27999894
Alignment:
Q  138 gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccaccc 203  Q
    ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||    
T  27999829 gaaagaaatttcagatagaggcctaatatcaaattggtgtccacaagagaaagttttgaaccaccc 27999894  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 24107114 - 24107065
Alignment:
Q  74 atgaacttgagagtgatgttatgaatgctttctattctatgttccctttt 123  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttccctttt 24107065  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 3086822 - 3086740
Alignment:
Q  138 gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||||| |||   ||||||||||    
T  3086822 gaaagaaatttcagatagaggtctaatcgcaagctggtgtccgcaagagcaagtattgaatcacccttcaattggtggattct 3086740  T

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Target: scaffold0477 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 4420 - 4498
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||| ||||||||| ||||| || || ||||||||||||||| ||||| |||||||||| |||   ||||||||||    
T  4420 gaaatttcagatagaggcctaattgcgagctggtgtccacaagagcaagtactgaaccacccttcaattggtggattct 4498  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 3453 - 3531
Alignment:
Q  142 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagccggtggattct 220  Q
    ||||||| ||||||||| |||||  |||| ||||||||||||||| ||||| ||| |||||| |||   ||||||||||    
T  3453 gaaatttcagatagaggcctaatcacaagctggtgtccacaagagcaagtactgatccacccttcaattggtggattct 3531  T

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Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 3067 - 3156
Alignment:
Q  30 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 119  Q
    |||| ||| ||| ||||||||||| || || || || |||| |||||||||||||||||||||  |||||||  || | |||||||||||    
T  3067 agatcaatttcacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttccc 3156  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 1351056 - 1351098
Alignment:
Q  149 aagatagaggactaatagcaagttggtgtccacaagagaaagt 191  Q
    |||||||||||||||| | | ||||||||||||||||||||||    
T  1351056 aagatagaggactaatggtaggttggtgtccacaagagaaagt 1351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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