View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_298 (Length: 239)
Name: NF8810A_low_298
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_298 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 35742596 - 35742834
Alignment:
| Q |
1 |
aatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttca |
100 |
Q |
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| T |
35742596 |
aatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttca |
35742695 |
T |
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| Q |
101 |
attgtgatctcaaatttgtagccattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattttataagtta |
200 |
Q |
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| T |
35742696 |
attgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataattctataagtta |
35742795 |
T |
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| Q |
201 |
ctggatcttcgagatcttcgagatcctcgaactcttcaa |
239 |
Q |
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| T |
35742796 |
ctggatcttcgagatcttcgagatcctcgtactcttcaa |
35742834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 35748963 - 35749153
Alignment:
| Q |
3 |
tatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaat |
102 |
Q |
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| T |
35748963 |
tatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaat |
35749062 |
T |
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| Q |
103 |
tgtgatctcaaatttgtagccattagatatgaaaagaccaaacttatctatcggcccttggtgctgcatgagaacatccgtgataatttta |
193 |
Q |
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| T |
35749063 |
tatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcggaccgttgtgttgcataagaacatctgtgatgatttta |
35749153 |
T |
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