View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_299 (Length: 239)
Name: NF8810A_low_299
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_299 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 3120949 - 3120740
Alignment:
| Q |
18 |
gttggttcttattatcaaggcgttcctgctacannnnnnncacttagaaaagttggaaaagttacactttatcaagatgctcatgttccacaaggttgtc |
117 |
Q |
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| T |
3120949 |
gttggttctgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtc |
3120850 |
T |
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| Q |
118 |
ttcctggtttgagggttgatgggtgtgatcatgatgttatttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggctcgtcgatt |
217 |
Q |
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| T |
3120849 |
ttcctggtttgagggttgatggtggtgatcatgatgttatttatgagagtggaaattgttggcaagatatctttgatgcaataagtcaggctcgtcgatt |
3120750 |
T |
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| Q |
218 |
ggtctatatt |
227 |
Q |
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|||||||||| |
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| T |
3120749 |
ggtctatatt |
3120740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 3115079 - 3114884
Alignment:
| Q |
32 |
tcaaggcgttcctgctacannnnnnncacttagaaaagttggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctggtttgagg |
131 |
Q |
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|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3115079 |
tcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagg |
3114980 |
T |
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| Q |
132 |
gttgatgggtgtgatcatgatgttatttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggctcgtcgattggtctatatt |
227 |
Q |
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| T |
3114979 |
gttgatggtggtgatcatgatttgagttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtatatatt |
3114884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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