View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_301 (Length: 238)

Name: NF8810A_low_301
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_301
NF8810A_low_301
[»] chr8 (6 HSPs)
chr8 (22-155)||(9369503-9369636)
chr8 (156-208)||(35033812-35033864)
chr8 (154-208)||(1051982-1052036)
chr8 (155-208)||(28982076-28982127)
chr8 (155-208)||(28987296-28987347)
chr8 (156-208)||(16886010-16886061)
[»] chr7 (16 HSPs)
chr7 (22-155)||(47817941-47818073)
chr7 (155-208)||(8212683-8212736)
chr7 (156-208)||(8195981-8196033)
chr7 (154-208)||(12756977-12757031)
chr7 (156-208)||(12398620-12398672)
chr7 (156-208)||(751180-751232)
chr7 (156-208)||(40921679-40921730)
chr7 (156-208)||(48986703-48986755)
chr7 (154-208)||(40683542-40683596)
chr7 (156-208)||(5186015-5186066)
chr7 (55-155)||(39255163-39255262)
chr7 (149-208)||(13595962-13596020)
chr7 (155-208)||(49151944-49151995)
chr7 (153-208)||(1319116-1319168)
chr7 (156-208)||(49158632-49158682)
chr7 (110-146)||(26049162-26049198)
[»] chr4 (15 HSPs)
chr4 (22-156)||(23668641-23668775)
chr4 (155-208)||(29454105-29454158)
chr4 (156-208)||(3096380-3096432)
chr4 (155-208)||(51930922-51930975)
chr4 (156-208)||(29447422-29447474)
chr4 (155-208)||(3265362-3265415)
chr4 (155-208)||(49748304-49748357)
chr4 (156-208)||(6457488-6457540)
chr4 (156-208)||(26396984-26397036)
chr4 (156-208)||(38637354-38637406)
chr4 (156-208)||(49239591-49239643)
chr4 (155-205)||(11938462-11938512)
chr4 (53-128)||(50124151-50124226)
chr4 (155-208)||(44662431-44662483)
chr4 (156-208)||(44656513-44656564)
[»] chr6 (14 HSPs)
chr6 (156-222)||(18360654-18360720)
chr6 (156-208)||(6928841-6928893)
chr6 (155-208)||(25465216-25465269)
chr6 (156-208)||(6955415-6955467)
chr6 (156-208)||(15299232-15299284)
chr6 (156-208)||(17311013-17311065)
chr6 (155-208)||(25314391-25314444)
chr6 (155-208)||(26201885-26201938)
chr6 (156-208)||(17703524-17703576)
chr6 (156-208)||(15330868-15330920)
chr6 (155-208)||(21894637-21894687)
chr6 (156-208)||(25558687-25558736)
chr6 (156-208)||(1537094-1537145)
chr6 (156-208)||(19215581-19215632)
[»] chr3 (12 HSPs)
chr3 (155-208)||(10383262-10383315)
chr3 (156-208)||(10424053-10424105)
chr3 (156-208)||(3109798-3109850)
chr3 (156-208)||(14843922-14843974)
chr3 (156-208)||(23825584-23825636)
chr3 (156-208)||(14951648-14951700)
chr3 (156-208)||(16413059-16413111)
chr3 (156-208)||(43722848-43722900)
chr3 (156-208)||(50654771-50654822)
chr3 (154-208)||(29494875-29494929)
chr3 (53-128)||(21219129-21219204)
chr3 (75-120)||(31532115-31532160)
[»] scaffold0136 (1 HSPs)
scaffold0136 (153-208)||(391-446)
[»] chr5 (7 HSPs)
chr5 (154-208)||(1110442-1110496)
chr5 (156-208)||(22246995-22247047)
chr5 (156-208)||(38014995-38015046)
chr5 (156-223)||(15462766-15462834)
chr5 (156-223)||(24009324-24009392)
chr5 (156-208)||(10687430-10687481)
chr5 (156-208)||(40009747-40009798)
[»] scaffold1026 (1 HSPs)
scaffold1026 (155-208)||(588-641)
[»] scaffold0126 (1 HSPs)
scaffold0126 (155-208)||(29003-29056)
[»] chr2 (9 HSPs)
chr2 (156-208)||(18979638-18979690)
chr2 (155-208)||(11358979-11359032)
chr2 (156-208)||(36983303-36983355)
chr2 (156-206)||(21606095-21606145)
chr2 (154-208)||(24480366-24480419)
chr2 (156-208)||(20938918-20938970)
chr2 (155-200)||(42553119-42553164)
chr2 (156-208)||(35586736-35586787)
chr2 (156-208)||(23887116-23887166)
[»] chr1 (13 HSPs)
chr1 (154-208)||(31534024-31534078)
chr1 (155-208)||(31550818-31550871)
chr1 (155-208)||(52400180-52400233)
chr1 (156-208)||(26722471-26722523)
chr1 (155-223)||(38906765-38906832)
chr1 (155-205)||(37676748-37676798)
chr1 (156-205)||(37683419-37683468)
chr1 (156-223)||(18419445-18419513)
chr1 (155-208)||(12203966-12204018)
chr1 (153-208)||(27691853-27691905)
chr1 (155-208)||(36210751-36210803)
chr1 (156-208)||(1525607-1525658)
chr1 (156-208)||(36210641-36210692)
[»] scaffold0072 (1 HSPs)
scaffold0072 (156-208)||(62796-62848)
[»] scaffold0276 (1 HSPs)
scaffold0276 (154-208)||(20847-20901)
[»] scaffold0430 (1 HSPs)
scaffold0430 (155-208)||(14779-14832)
[»] scaffold0041 (1 HSPs)
scaffold0041 (156-208)||(51365-51416)
[»] scaffold0137 (1 HSPs)
scaffold0137 (156-208)||(25115-25167)
[»] scaffold0089 (1 HSPs)
scaffold0089 (155-208)||(17281-17333)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 9369503 - 9369636
Alignment:
Q  22 gtaccatagagtgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaa 121  Q
    |||||||| |||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9369503 gtaccataaagtgtgggaagaataatgaactctttaatggttggaaaatttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaa 9369602  T
Q  122 tcttttcatttgaatgtttatgaaaagtgtgaat 155  Q
    ||||||||||||||||||||||||||||||||||    
T  9369603 tcttttcatttgaatgtttatgaaaagtgtgaat 9369636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 35033864 - 35033812
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033864 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 35033812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 1052036 - 1051982
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1052036 attgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 1051982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 28982127 - 28982076
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  28982127 ttgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 28982076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 28987347 - 28987296
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  28987347 ttgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 28987296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 16886010 - 16886061
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  16886010 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 16886061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 47818073 - 47817941
Alignment:
Q  22 gtaccatagagtgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaa 121  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47818073 gtaccataaagtgtgagaagaagaatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcatatgtaa 47817974  T
Q  122 tcttttcatttgaatgtttatgaaaagtgtgaat 155  Q
    |||||||||||||||| |||||||||||||||||    
T  47817973 tcttttcatttgaatg-ttatgaaaagtgtgaat 47817941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 8212683 - 8212736
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8212683 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 8212736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 8195981 - 8196033
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8195981 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 8196033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 12756977 - 12757031
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  12756977 attgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 12757031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 12398620 - 12398672
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  12398620 tgtaacgccctagttatttatttaattaattttaaactatgttgagtatatat 12398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 751232 - 751180
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  751232 tgtaacgccctagttatttatttaattaattttatactatgtggagcatatat 751180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 40921679 - 40921730
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  40921679 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 40921730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 48986703 - 48986755
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  48986703 tgtaacgccctagttatttatttaattaattttatactatgtggagcatatat 48986755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 40683542 - 40683596
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  40683542 attgtaacgccctaattatttatttaattaattttatactatgtggagcatatat 40683596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 5186015 - 5186066
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  5186015 tgtaacgccctagttatt-atttaattaattttatactatgtggagtatatat 5186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 39255163 - 39255262
Alignment:
Q  55 ttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttcatttgaatgtttatgaaaagtgtgaa 154  Q
    ||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||  |||| ||| ||| |||||||||||    
T  39255163 ttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttctcttgagtgtatat-aaaagtgtgaa 39255261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 13596020 - 13595962
Alignment:
Q  149 tgtgaattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||| |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  13596020 tgtgatttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 13595962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 49151995 - 49151944
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| |||||||||||| |||||  | ||||||||||||||||    
T  49151995 ttgtaacgccctagttatttatttaattgatttt--attatgtggagtatatat 49151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 1319168 - 1319116
Alignment:
Q  153 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||||| ||||||||||||| |||   | ||||||||||||||||    
T  1319168 aattgtaacgccctagttatttatttaattatttt---attatgtggagtatatat 1319116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 49158682 - 49158632
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||| |||||  | ||||||||||||||||    
T  49158682 tgtaacgccctagttatttatttaattgatttt--attatgtggagtatatat 49158632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 26049162 - 26049198
Alignment:
Q  110 ttgcagatgtaatcttttcatttgaatgtttatgaaa 146  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26049162 ttgcagatgtaatcttttcattttaatggttatgaaa 26049198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 23668641 - 23668775
Alignment:
Q  22 gtaccatagagtgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaa 121  Q
    |||||||| | |||| ||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23668641 gtaccataaaatgtgggaagattaatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttctttgttgcagatgtaa 23668740  T
Q  122 tcttttcatttgaatgtttatgaaaagtgtgaatt 156  Q
    |||||||| |||||||||||| |||||||||||||    
T  23668741 tcttttcaattgaatgtttataaaaagtgtgaatt 23668775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 29454105 - 29454158
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29454105 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 29454158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 3096380 - 3096432
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3096380 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 3096432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 51930922 - 51930975
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51930922 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 51930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 29447422 - 29447474
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29447422 tgtaacgtcctagtgatttatttaattaattttaaactatgtggagtatatat 29447474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 3265362 - 3265415
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  3265362 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 3265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 49748304 - 49748357
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49748304 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 49748357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 6457488 - 6457540
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6457488 tgtaacgccctagttatttatttaattaattgtaaactatgtggagtatatat 6457540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 26397036 - 26396984
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  26397036 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 26396984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 38637354 - 38637406
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38637354 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 38637406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 49239591 - 49239643
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49239591 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 49239643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 11938512 - 11938462
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 205  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  11938512 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 11938462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 50124151 - 50124226
Alignment:
Q  53 ctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttc 128  Q
    ||||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||    
T  50124151 ctttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttc 50124226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 44662431 - 44662483
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| |||||||||||||| |||  | ||||||||||||||||    
T  44662431 ttgtaacgccctagttatttatttaattaa-tttggattatgtggagtatatat 44662483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 44656513 - 44656564
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||||| |||  | ||||||||||||||||    
T  44656513 tgtaacgccctagttatttatttaattaa-tttggattatgtggagtatatat 44656564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 18360720 - 18360654
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattgtatatgatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18360720 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattatatatgatg 18360654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 6928841 - 6928893
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6928841 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 6928893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 25465269 - 25465216
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  25465269 ttgtaacgccctagttatttatttaattaattttaaactatgaggagtatatat 25465216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 6955467 - 6955415
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6955467 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 6955415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 15299284 - 15299232
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  15299284 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 15299232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 17311065 - 17311013
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  17311065 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 17311013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 25314391 - 25314444
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  25314391 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 25314444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 26201885 - 26201938
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  26201885 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 26201938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 17703576 - 17703524
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||||||||| |  ||||||||||||||||    
T  17703576 tgtaacgccctagttatttatttaattaattttgatttatgtggagtatatat 17703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 15330868 - 15330920
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | |||||||||||| |||||||||||| ||||||| ||||    
T  15330868 tgtaacgccctatttatttatttaatttattttaaactatttggagtaaatat 15330920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 21894637 - 21894687
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  21894637 ttgtaacgccctagttatttatttaatt-attttaa--tatgtggagtatatat 21894687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 25558687 - 25558736
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  25558687 tgtaacgccctagt-atttatttaattaatttt--attatgtggagtatatat 25558736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 1537094 - 1537145
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  1537094 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 1537145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 19215632 - 19215581
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  19215632 tgtaacgccctagttgtttatttaattaa-tttgaagtatgtggagtatatat 19215581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 10383315 - 10383262
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10383315 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 10383262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 10424105 - 10424053
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10424105 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 10424053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 3109850 - 3109798
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3109850 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 3109798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 14843922 - 14843974
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14843922 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 14843974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 23825584 - 23825636
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23825584 tgtaacgccctggtgatttatttaattaattttaaactatgtggagtatatat 23825636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 14951700 - 14951648
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  14951700 tgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 14951648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 16413059 - 16413111
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  16413059 tgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 16413111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 43722848 - 43722900
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  43722848 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 43722900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 50654771 - 50654822
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  50654771 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 50654822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 29494929 - 29494875
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||    
T  29494929 attgtaacgccctagttatttatttaattaatttttaaccatgaggagtatatat 29494875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 21219204 - 21219129
Alignment:
Q  53 ctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttc 128  Q
    ||||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||    
T  21219204 ctttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttc 21219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 31532115 - 31532160
Alignment:
Q  75 ttttttgttgtaatttgtatgggttgtgttctttgttgcagatgta 120  Q
    |||||||||||| ||| |||||||||||||||| |||||| |||||    
T  31532115 ttttttgttgtagtttttatgggttgtgttcttggttgcatatgta 31532160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 446 - 391
Alignment:
Q  153 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  446 aattgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 1110442 - 1110496
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1110442 attgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 1110496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 22246995 - 22247047
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  22246995 tgtaacgccctagttatttatttaattaatttttaactatgtggagtatatat 22247047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 38015046 - 38014995
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  38015046 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 38014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 15462834 - 15462766
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtata--tattattgtatatgatgt 223  Q
    |||||||||||||| |||||||||||||| ||| || |||||||||||||  ||||||| ||||||||||    
T  15462834 tgtaacgccctagttatttatttaattaa-tttgaattatgtggagtatatgtattattatatatgatgt 15462766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 24009392 - 24009324
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggag--tatatattattgtatatgatgt 223  Q
    ||||||||||||||  ||||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||    
T  24009392 tgtaacgccctagttgtttatttaattaa-tttgaactatgtggagtatatatattattatatatgatgt 24009324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 10687481 - 10687430
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  10687481 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 10687430  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 40009747 - 40009798
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  40009747 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 40009798  T

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Target: scaffold1026 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 641 - 588
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  641 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 588  T

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Target: scaffold0126 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 29003 - 29056
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29003 ttgtaacgctctagtgatttatttaattaattttaaactatgtggagtatatat 29056  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 18979690 - 18979638
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18979690 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 18979638  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 11358979 - 11359032
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  11358979 ttgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 11359032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 36983303 - 36983355
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36983303 tgtaacgccctagttatttatttaattaattttaatctatgtggagtatatat 36983355  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 21606145 - 21606095
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatat 206  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  21606145 tgtaacgccctagttatttatttaattaattttaaagtatgtggagtatat 21606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 24480366 - 24480419
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  24480366 attgtaacgccctagttatttatttaatt-attttaaactatgtggagtatatat 24480419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 20938970 - 20938918
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  20938970 tgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 20938918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 42553164 - 42553119
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtgga 200  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  42553164 ttgtaacgccctagttatttatttaattaattttatactatgtgga 42553119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 35586787 - 35586736
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  35586787 tgtaacgccctagttatttatttaatt-attttaaactatgtggagtgtatat 35586736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 23887116 - 23887166
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  23887116 tgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 23887166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 31534024 - 31534078
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  31534024 attgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 31534078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 31550818 - 31550871
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  31550818 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 31550871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 52400233 - 52400180
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  52400233 ttgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 52400180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 26722471 - 26722523
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  26722471 tgtaacgccctagttatttatttaattaatttgaaactatatggagtatatat 26722523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 38906765 - 38906832
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattgtatatgatgt 223  Q
    ||||||||||||||| |||||||||||||| ||| || ||||||||||||||||| || ||||||||||    
T  38906765 ttgtaacgccctagttatttatttaattaa-tttgaattatgtggagtatatatttttatatatgatgt 38906832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 37676798 - 37676748
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 205  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37676798 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 37676748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 37683468 - 37683419
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 205  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37683468 tgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 37683419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 18419513 - 18419445
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggag--tatatattattgtatatgatgt 223  Q
    ||||||||||||||  | ||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||    
T  18419513 tgtaacgccctagttgtctatttaattaa-tttgaactatgtggagtatatatattattatatatgatgt 18419445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 12204018 - 12203966
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  12204018 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 12203966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 27691853 - 27691905
Alignment:
Q  153 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||||| ||||||||||||| |||   | ||||||||||||||||    
T  27691853 aattgtaacgccctagttatttatttaattatttt---attatgtggagtatatat 27691905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 36210751 - 36210803
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  36210751 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 36210803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 1525607 - 1525658
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  1525607 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 1525658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 36210641 - 36210692
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  36210641 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 36210692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 62796 - 62848
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  62796 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 62848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 20847 - 20901
Alignment:
Q  154 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  20847 attgtaacgccctagttatttatttaattaattttatactacgtggagtatatat 20901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 14779 - 14832
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  14779 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 14832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 51416 - 51365
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  51416 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 51365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 25115 - 25167
Alignment:
Q  156 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  25115 tgtaacgccctagttatttatttaattaatttgaatttatgtggagtatatat 25167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 17281 - 17333
Alignment:
Q  155 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 208  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  17281 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 17333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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