View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_303 (Length: 238)
Name: NF8810A_low_303
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_303 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 30455873 - 30456074
Alignment:
| Q |
16 |
aaaatcaatcttgctaagagaaatcttttgggggtggaggactctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttc |
115 |
Q |
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| T |
30455873 |
aaaatcaatcttgctaagaaaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgaatcgatgactcatctctttcttc |
30455972 |
T |
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| Q |
116 |
attgtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttatttgtccatgctttatgttggac |
215 |
Q |
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| T |
30455973 |
attgtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcatgccgtcgaatttatttgtccatgctttatgttggac |
30456072 |
T |
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| Q |
216 |
ta |
217 |
Q |
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|| |
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| T |
30456073 |
ta |
30456074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 5745743 - 5745916
Alignment:
| Q |
22 |
aatcttgctaagagaaatcttttgggggtggaggactctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcattgtg |
121 |
Q |
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| T |
5745743 |
aatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttttcttcattgta |
5745842 |
T |
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| Q |
122 |
agtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttattt |
195 |
Q |
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| T |
5745843 |
gttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttattt |
5745916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 5782702 - 5782875
Alignment:
| Q |
22 |
aatcttgctaagagaaatcttttgggggtggaggactctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcattgtg |
121 |
Q |
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|||||||| ||||||| ||| ||| ||| ||| || ||||||||||||||||||||||| | || || || |||| | |||||| |||||||||||| |
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| T |
5782702 |
aatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttttcttcattgta |
5782801 |
T |
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| Q |
122 |
agtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttattt |
195 |
Q |
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| T |
5782802 |
gttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttattt |
5782875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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