View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_307 (Length: 236)

Name: NF8810A_low_307
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_307
NF8810A_low_307
[»] chr7 (1 HSPs)
chr7 (9-219)||(33866439-33866633)
[»] chr6 (1 HSPs)
chr6 (9-124)||(11075713-11075828)
[»] chr3 (2 HSPs)
chr3 (9-124)||(23216040-23216155)
chr3 (125-219)||(23214342-23214436)
[»] chr8 (1 HSPs)
chr8 (129-219)||(5771419-5771509)
[»] chr5 (6 HSPs)
chr5 (41-119)||(30340329-30340407)
chr5 (41-82)||(30746089-30746130)
chr5 (41-82)||(30432475-30432516)
chr5 (41-82)||(30479930-30479971)
chr5 (41-82)||(30680842-30680883)
chr5 (41-82)||(30716982-30717023)
[»] chr4 (1 HSPs)
chr4 (41-82)||(20303061-20303102)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 33866439 - 33866633
Alignment:
Q  9 atgtccaagaaaatgaatgatgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctgg 108  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33866439 atgtccaacaaaatgaatgatgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctgg 33866538  T
Q  109 tttcaaggtaaggaaatcatgcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggc 208  Q
    ||||||||||||||||||                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33866539 tttcaaggtaaggaaatc----------------atgcaaccatgaataaaaaattattctaacttaccgtgacagcggaaatcatgggtatatgaaggc 33866622  T

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Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 11075713 - 11075828
Alignment:
Q  9 atgtccaagaaaatgaatgatgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctgg 108  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11075713 atgtccaacaaaatgaatgatgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgctggttaaagctgg 11075812  T
Q  109 tttcaaggtaaggaaa 124  Q
    ||||||||||||||||    
T  11075813 tttcaaggtaaggaaa 11075828  T

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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 23216155 - 23216040
Alignment:
Q  9 atgtccaagaaaatgaatgatgcacgagttacaggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctgg 108  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23216155 atgtccaacaaaatgaatgatgcacgagttacaggagcgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgctggttaaagctgg 23216056  T
Q  109 tttcaaggtaaggaaa 124  Q
    ||||||||||||||||    
T  23216055 tttcaaggtaaggaaa 23216040  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 23214436 - 23214342
Alignment:
Q  125 tcatgcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggcaggagtgattg 219  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23214436 tcatgcaagtctttaattatgcaaccatgaataaagaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattg 23214342  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 5771509 - 5771419
Alignment:
Q  129 gcaagtctttaattatgcaaccatgaataaaaaattattctaacttgccgtgacagcggaaatcatgggtatatgaaggcaggagtgattg 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5771509 gcaagtctttaattatgcaaccatgaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattg 5771419  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 30340329 - 30340407
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaactaataaatcattgatggttaaagctggtttcaaggtaa 119  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||  || ||| ||||||  | ||||||| ||||||    
T  30340329 aggagtgaagtttgctgctgaagatttcaatttcctttaactgatatctctttgctggttatcgttggtttccaggtaa 30340407  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 30746130 - 30746089
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  30746130 aggaatgaagtttgctgctgaagatatcaatttcctttaact 30746089  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 30432516 - 30432475
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  30432516 aggaatgaagtttgctgctgaagatttcaatttcctttaact 30432475  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 30479971 - 30479930
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||||||| |||||||||||||| | ||||||||||||||||    
T  30479971 aggagtgatgtttgctgctgaagatttcaatttcctttaact 30479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 30680842 - 30680883
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  30680842 aggaatgaagtttgctgctgaagatttcaatttcctttaact 30680883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 30716982 - 30717023
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  30716982 aggaatgaagtttgctgctgaagatttcaatttcctttaact 30717023  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 20303061 - 20303102
Alignment:
Q  41 aggagtgaagtttgctgctgaagttatcaatttcctttaact 82  Q
    |||||||||| |||||||||||| | ||||||||||||||||    
T  20303061 aggagtgaaggttgctgctgaagatttcaatttcctttaact 20303102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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