View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_31 (Length: 413)
Name: NF8810A_low_31
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Original strand, 55932001 - 55932403
Alignment:
| Q |
6 |
agtaccaaaattagacaaacacaacaacttcacgaggagcactgctaagtagaaaactactaagcactaatgttcaaatgcatagctttttaatttaaca |
105 |
Q |
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| T |
55932001 |
agtaccaaaattagacaaacacaacaacttcacgaggagcactgctaagtagaaaactactaagcactaatgttcaaatgcatcgctttttaatttaaca |
55932100 |
T |
|
| Q |
106 |
tgtgcaggtagagaaccatattatgatttccattactagggacaaatacttaataaggctagagctaatttagtttgtaccgttatcatttgtctttcaa |
205 |
Q |
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| T |
55932101 |
tgtgcaggtagagaacctaattatgatttccattactagggacaaatacttaataaggctagagctaatttagtttgtaccgttatcatttgtctttcaa |
55932200 |
T |
|
| Q |
206 |
ctttaatgcttgaaagacaatcctcacgaactctcaaattattgaaaatccgcgtcgaagttccaagagcaatggtgagaagtccaaaagaaattcccaa |
305 |
Q |
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| T |
55932201 |
ctttaatgcttgaaagacaatcctcgcgaactctcaaattattgaaaatccgcgtcgaagttccaagagcaatggtgagaagtccaaaagaaattcccaa |
55932300 |
T |
|
| Q |
306 |
ctcgtcgctgcgagaagcttatgtggtttatttctcttattcatcgaaatttgcatggttgaagttattaatggctcatatcctgccaagtatattcttc |
405 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55932301 |
cttgtcgctgcgagaagcttatgtagtttatttctcttattcatcgaaatttgcatggttgaagttattaatggctcatatcctgccaagtatattattc |
55932400 |
T |
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| Q |
406 |
gac |
408 |
Q |
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| T |
55932401 |
gac |
55932403 |
T |
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