View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_310 (Length: 235)
Name: NF8810A_low_310
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_310 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 44110793 - 44110863
Alignment:
| Q |
15 |
aaaaatatcatattaaatat--cctaacaaggattcatagccaccactacaatgatgagtaagttttcata |
83 |
Q |
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| T |
44110793 |
aaaaaaatcatattaaatatatcctaacaaggattcatagccaccactacaatgatgagtaagttttcata |
44110863 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 1321960 - 1321890
Alignment:
| Q |
51 |
agccaccactacaatgatgagtaagttttcataat-cattgaca-tttatgtttatatgttacatttttcc |
119 |
Q |
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| T |
1321960 |
agccaccactacaataacaagtaatttttcataatccattgacattttatatttatacgttacatttttcc |
1321890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 28008302 - 28008380
Alignment:
| Q |
51 |
agccaccactacaatgatgag-taagttttcataatc-attgacattt-atgtttatatgttacatttttcccctttaa |
126 |
Q |
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| T |
28008302 |
agccaccactacaataaaaaggtaagttttcataatccattgacattttatgtttatacgttacatttttgctctttaa |
28008380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 33469313 - 33469236
Alignment:
| Q |
51 |
agccaccactacaatgatgagtaagttttcataatca-ttgacattt-atgtttatatgttacatttttcccctttaa |
126 |
Q |
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| T |
33469313 |
agccaccactacaataactagtaagttttcatactcaattgacattttatgtttatatgttacattttttctctttaa |
33469236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 20530408 - 20530350
Alignment:
| Q |
70 |
agtaagttttcataat-cattgacattt-atgtttatatgttacatttttcccctttaa |
126 |
Q |
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| T |
20530408 |
agtaaattttcataattcattgacattttatgtttatatgttacatttttcctctttaa |
20530350 |
T |
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Target: scaffold0591 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 2245 - 2287
Alignment:
| Q |
78 |
ttcataatcattgacattt-atgtttatatgttacatttttcc |
119 |
Q |
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| T |
2245 |
ttcattatcattgacattttatgtttatatgttacatttttcc |
2287 |
T |
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