View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_315 (Length: 234)
Name: NF8810A_low_315
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_315 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 12169763 - 12169950
Alignment:
| Q |
22 |
tcagtaaagtaaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgaga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12169763 |
tcagtaaagtaaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgaga |
12169862 |
T |
|
| Q |
122 |
aacaaattaatggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaatggaccataacaacattgctgatatt |
209 |
Q |
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| T |
12169863 |
aacaaattaatggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaattgaccataacaacattgctgatatt |
12169950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 12414191 - 12414378
Alignment:
| Q |
22 |
tcagtaaagtaaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgaga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12414191 |
tcagtaaagtaaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgaga |
12414290 |
T |
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| Q |
122 |
aacaaattaatggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaatggaccataacaacattgctgatatt |
209 |
Q |
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| T |
12414291 |
aacaaattaatggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaattgaccataacaacattgctgatatt |
12414378 |
T |
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