View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_317 (Length: 234)
Name: NF8810A_low_317
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_317 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 22060544 - 22060350
Alignment:
| Q |
25 |
aaaacttcagtgatgttattacacaagaatgtgtatcattatcataggatttcatctattatgtattatataattagagaccattaaaactacctcctgc |
124 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
22060544 |
aaaacttcagtgatgttattacacaagaatatgtatcattatcataggatttcatctattatgtattatataattagagaccattacaaccacctcctgc |
22060445 |
T |
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| Q |
125 |
ttattattatataatcagtcattactctaaaggtaattatcatgtgcaatatatttgaatattatattggcttttctttctaattggagtataat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
22060444 |
ttattattatataatcagtcattactctaaaggtaattatcatgtgcaatatattttaatattatattggcttttctttctgattggagtataat |
22060350 |
T |
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