View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_325 (Length: 231)
Name: NF8810A_low_325
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_325 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 25902495 - 25902268
Alignment:
| Q |
4 |
atggtgggtcgttgaaattcagcagtaagtagggagtggtgggtccttgaaatacagtagctgtaagcagggagtggtgggtgggagttgaacttcatga |
103 |
Q |
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| T |
25902495 |
atggtgggtcgttgaaattcagcagtaagcagggagtggtgggtccttgaaatacagtagctgtaagcagggagtggtgggtgtgagttgaacttcatga |
25902396 |
T |
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| Q |
104 |
gaatcttttgcagtttgtagtgagtgggtcaagggtgttgaactgtattataggtggagtattaatctggtattgtatattgcggttactaatggaagag |
203 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25902395 |
gaatcttttgcagtttgtagtgagtggttcaagggtgttgaactgtattataggtggagtattaatctggtattgtatattgtggttactaatggaagag |
25902296 |
T |
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| Q |
204 |
gcttgccgaaaccatagcctcaccaaaa |
231 |
Q |
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|||||| | |||||||||||||| |||| |
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| T |
25902295 |
gcttgcaggaaccatagcctcacaaaaa |
25902268 |
T |
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