View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_326 (Length: 231)

Name: NF8810A_low_326
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_326
NF8810A_low_326
[»] chr4 (5 HSPs)
chr4 (1-231)||(13214613-13214840)
chr4 (105-223)||(23821981-23822098)
chr4 (88-201)||(32602045-32602157)
chr4 (83-204)||(20233349-20233467)
chr4 (88-132)||(30065027-30065071)
[»] chr1 (1 HSPs)
chr1 (64-225)||(2199194-2199353)
[»] chr5 (3 HSPs)
chr5 (65-225)||(10110824-10110982)
chr5 (110-158)||(14628835-14628884)
chr5 (182-225)||(14628786-14628829)
[»] scaffold0103 (1 HSPs)
scaffold0103 (63-225)||(29907-30065)
[»] chr3 (2 HSPs)
chr3 (65-225)||(28762138-28762296)
chr3 (83-203)||(50229830-50229946)
[»] chr2 (2 HSPs)
chr2 (63-225)||(33712369-33712527)
chr2 (66-221)||(8335593-8335744)
[»] chr7 (2 HSPs)
chr7 (163-225)||(36937056-36937118)
chr7 (88-134)||(36937120-36937166)
[»] chr8 (2 HSPs)
chr8 (162-224)||(3471084-3471146)
chr8 (97-201)||(30029025-30029128)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 13214840 - 13214613
Alignment:
Q  1 aattgcatgtcacaagtagttttattctaagggtttgtctaacatgttccacatgttaaaacaagagaaatgatatatttggcaacattttggttgtcca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13214840 aattgcatgtcacaagtagttttattctaagggtt-gtctaacatgttgcacatgttaaaacaagagaaatgatatatttgacaacattttggttgtcca 13214742  T
Q  101 acatcgtatatctataccgtatagatactatatcatttttaattagttgtttctctctctcttatagtcatatcaatagttataattgatgtatttttat 200  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||    
T  13214741 atatcgtatatctataccgcatagatactatatcatttttaattagttgtttctct--ctcttatagtcacattaatagttataattgatgtatttttat 13214644  T
Q  201 actacttgtccaaaagttgttgattatttga 231  Q
    |||||||||||||||||||||||||||||||    
T  13214643 actacttgtccaaaagttgttgattatttga 13214613  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 23821981 - 23822098
Alignment:
Q  105 cgtatatctataccgtatagatactatatca-tttttaattagttgtttctctctctcttatagtcatatcaatagttataattgatgtatttttatact 203  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23821981 cgtatatctatatcgtatagatactatgtcactttttaattagttgtttctc--tctcttatagtcacatcaatagttataattgatgtatttttatact 23822078  T
Q  204 acttgtccaaaagttgttga 223  Q
    | |||| |||||||||||||    
T  23822079 agttgttcaaaagttgttga 23822098  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 32602045 - 32602157
Alignment:
Q  88 ttttggttgtccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctcttatagtcatatcaatagttataat 186  Q
    |||||||||||||||| ||||||| ||||  |||||  || |||||||||||| ||||||||  |||||||||   |||||||| |||| | |||||||     
T  32602045 ttttggttgtccaacaacgtatatttatattgtataagtaatatatcattttttaattagttacttctctctca--tatagtcacatcattcgttataaa 32602142  T
Q  187 tgatgtatttttata 201  Q
    |||||||||||||||    
T  32602143 tgatgtatttttata 32602157  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 20233467 - 20233349
Alignment:
Q  83 caacattttggttgtccaacatcgtatatctataccgtatagatactatatcatttt-taattagttgtttctctctctcttatagtcatatcaatagtt 181  Q
    ||||| || |||||||||||| |||||||||||||  |||||||||||| ||||||| |||||| ||  |    ||||| ||||||||| ||||| ||||    
T  20233467 caacaattcggttgtccaacaacgtatatctatactatatagatactatttcattttgtaattaattaat----tctcttttatagtcacatcaacagtt 20233372  T
Q  182 ataattgatgtatttttatacta 204  Q
    ||||  ||| |||||||||||||    
T  20233371 ataaaagatatatttttatacta 20233349  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 30065071 - 30065027
Alignment:
Q  88 ttttggttgtccaacatcgtatatctataccgtatagatactata 132  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  30065071 ttttggttgtccaacaacttatatctatactgtatagatactata 30065027  T

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Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 2199353 - 2199194
Alignment:
Q  64 agagaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctct 162  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||      
T  2199353 agagaaatgatatatt-gacaaccttttggttgtccaacatcgtatatctataccgtatagatactacgtcattttttaattagttgtttctctctct-- 2199257  T
Q  163 tatagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2199256 tatagtcacatcaatagttataattgatgtatttttatactagttgtccaaaagttgttgatt 2199194  T

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Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 10110824 - 10110982
Alignment:
Q  65 gagaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctctt 163  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||||||    
T  10110824 gagaaatgatatatt-gacaaccttttggttgtccaacatcgtatatctataccgtatagatactatgtcattttttaattagttgtttctc--tctctt 10110920  T
Q  164 atagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  10110921 atagtcacatcaatagttataattgatgtatttttatactagttgttcaaaagttgttgatt 10110982  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 14628884 - 14628835
Alignment:
Q  110 atctataccgtatagatactatatcat-ttttaattagttgtttctctct 158  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  14628884 atctatactgtatagatactatatcattttttaattagttgtttctctct 14628835  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 14628829 - 14628786
Alignment:
Q  182 ataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    |||||||||||||||||||| || |||||||||| |||||||||    
T  14628829 ataattgatgtatttttatattagttgtccaaaaattgttgatt 14628786  T

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Target: scaffold0103 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 29907 - 30065
Alignment:
Q  63 aagagaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctc 161  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||    ||    
T  29907 aagagaaatgatatatt-gacaaccttttggttgtccaacatcgtatatctataccatatagataatatataattttttaattagttgtttctc----tc 30001  T
Q  162 ttatagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30002 ttatagtcacatcaatagttataattgatgtatttttatactagttgtccaaaagttgttgatt 30065  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 28762138 - 28762296
Alignment:
Q  65 gagaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctctt 163  Q
    ||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||    
T  28762138 gagaaattatatatt-gacaaccttttggttgtccaacatcgtatatctataccgtatagatactatattattttttaattagttgtttctc--tctctt 28762234  T
Q  164 atagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    ||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  28762235 ataatcacatcaatagttataattgatgtatttttatactagttgttcaaaagttgttgatt 28762296  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 50229946 - 50229830
Alignment:
Q  83 caacattttggttgtccaacatcgtatatctataccgtatagatactatatcatttttaattagttgtttctctctctcttatagtcatatcaatagtta 182  Q
    |||| |||||||||| ||| | | ||||| |||||||||||  |||||| ||||||||||||| || ||    |||||||||| ||||||||| ||||||    
T  50229946 caaccttttggttgttcaataccatatatgtataccgtataagtactatttcatttttaattacttatt----tctctcttatggtcatatcattagtta 50229851  T
Q  183 taattgatgtatttttatact 203  Q
    ||| |  ||||||||||||||    
T  50229850 taaattgtgtatttttatact 50229830  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 33712369 - 33712527
Alignment:
Q  63 aagagaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatca-tttttaattagttgtttctctctctc 161  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    |||| |    
T  33712369 aagagaaatgatatatt-gacaaccttttggttgtccaacatcgtatatctatactgtatagatactatatcattttttaattagttgtt----tctcgc 33712463  T
Q  162 ttatagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    |||| |||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  33712464 ttatggtcacatcaatagttataattgatgtatttttatactagttgtccaaaaattattgatt 33712527  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 8335593 - 8335744
Alignment:
Q  66 agaaatgatatatttggcaacattttggttgtccaacatcgtatatctataccgtatagatactatatca-tttttaattagttgtttctctctctctta 164  Q
    |||||||||||||| | |||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    |||||||||    
T  8335593 agaaatgatatatt-gacaaccttttagttgtccaacatcgtatatctatactgtatagatactatatcattttttaattagttgtt----tctctctta 8335687  T
Q  165 tagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgtt 221  Q
    | |||| ||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  8335688 tggtcacatcaatagttataattgatgtatttttatacaagttgtccaaaaattgtt 8335744  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 36937118 - 36937056
Alignment:
Q  163 tatagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgatt 225  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  36937118 tatagtcatatcaatagttataattgatgtatttttaaactagttgtccaaaagttgttgatt 36937056  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 36937166 - 36937120
Alignment:
Q  88 ttttggttgtccaacatcgtatatctataccgtatagatactatatc 134  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||    
T  36937166 ttttggttatccaacatcgtatatctatattgtatagatactatatc 36937120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 3471084 - 3471146
Alignment:
Q  162 ttatagtcatatcaatagttataattgatgtatttttatactacttgtccaaaagttgttgat 224  Q
    ||||| ||| ||||||||||||||||| |||||||||||| || |||||| | ||||||||||    
T  3471084 ttatattcacatcaatagttataattgctgtatttttatattaattgtcccatagttgttgat 3471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 30029025 - 30029128
Alignment:
Q  97 tccaacatcgtatatctataccgtatagatactatatcattttt-aattagttgtttctctctctcttatagtcatatcaatagttataattgatgtatt 195  Q
    ||||||| ||||||| ||||| ||||| ||||||| | |||||| |||||||| |||||||| |   ||||||||  ||||||||||||| | |||||||    
T  30029025 tccaacaacgtatatttatactgtataaatactattttattttttaattagttatttctctcgca--tatagtcacgtcaatagttataaataatgtatt 30029122  T
Q  196 tttata 201  Q
    ||||||    
T  30029123 tttata 30029128  T

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