View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_327 (Length: 231)

Name: NF8810A_low_327
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_327
NF8810A_low_327
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-231)||(42220-42451)
[»] chr8 (11 HSPs)
chr8 (8-231)||(18617426-18617650)
chr8 (31-208)||(21495807-21495987)
chr8 (31-208)||(22884945-22885127)
chr8 (8-151)||(41508666-41508809)
chr8 (8-79)||(18610785-18610856)
chr8 (60-151)||(45476020-45476112)
chr8 (7-147)||(20708244-20708386)
chr8 (7-137)||(16000622-16000754)
chr8 (31-79)||(16041133-16041182)
chr8 (31-79)||(16042809-16042858)
chr8 (94-151)||(21233697-21233754)
[»] scaffold0833 (1 HSPs)
scaffold0833 (1-231)||(1614-1845)
[»] chr7 (9 HSPs)
chr7 (1-231)||(47482424-47482655)
chr7 (1-229)||(48623866-48624095)
chr7 (31-208)||(3048213-3048393)
chr7 (31-206)||(13319783-13319961)
chr7 (7-127)||(7286041-7286160)
chr7 (23-151)||(25122770-25122898)
chr7 (8-79)||(14252908-14252979)
chr7 (7-151)||(28388887-28389033)
chr7 (7-147)||(9641498-9641640)
[»] chr5 (8 HSPs)
chr5 (1-231)||(7527579-7527810)
chr5 (1-206)||(17908164-17908370)
chr5 (1-162)||(23985867-23986028)
chr5 (31-182)||(32949619-32949772)
chr5 (8-151)||(2030372-2030515)
chr5 (8-127)||(25003444-25003563)
chr5 (8-79)||(34937976-34938047)
chr5 (7-147)||(23235984-23236126)
[»] chr2 (9 HSPs)
chr2 (3-207)||(22254786-22254992)
chr2 (1-231)||(28032576-28032806)
chr2 (1-218)||(17203020-17203238)
chr2 (68-206)||(25254853-25254993)
chr2 (31-179)||(23779422-23779574)
chr2 (7-181)||(32464398-32464571)
chr2 (8-79)||(42179974-42180045)
chr2 (7-168)||(16294320-16294483)
chr2 (8-58)||(7513621-7513671)
[»] scaffold0335 (1 HSPs)
scaffold0335 (1-206)||(9613-9819)
[»] chr6 (10 HSPs)
chr6 (9-182)||(16301584-16301755)
chr6 (31-208)||(32278117-32278297)
chr6 (31-182)||(29664727-29664880)
chr6 (8-173)||(14150999-14151165)
chr6 (8-169)||(27739537-27739701)
chr6 (8-79)||(19627855-19627926)
chr6 (7-151)||(31469115-31469261)
chr6 (8-56)||(35010882-35010930)
chr6 (7-147)||(19670935-19671077)
chr6 (60-124)||(26523725-26523790)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-206)||(29960-30168)
[»] chr3 (13 HSPs)
chr3 (1-206)||(9304214-9304422)
chr3 (1-179)||(12903346-12903526)
chr3 (31-208)||(14283791-14283971)
chr3 (31-208)||(23887686-23887866)
chr3 (31-208)||(38166532-38166712)
chr3 (31-206)||(11987665-11987843)
chr3 (31-206)||(17936729-17936908)
chr3 (8-151)||(51962704-51962847)
chr3 (1-127)||(18738353-18738481)
chr3 (31-208)||(11480578-11480759)
chr3 (8-79)||(54040152-54040223)
chr3 (8-79)||(54049439-54049510)
chr3 (7-151)||(11636956-11637102)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-168)||(165941-166107)
[»] scaffold0615 (1 HSPs)
scaffold0615 (1-179)||(7562-7742)
[»] scaffold0207 (1 HSPs)
scaffold0207 (31-208)||(16432-16612)
[»] scaffold0162 (2 HSPs)
scaffold0162 (31-182)||(17734-17886)
scaffold0162 (8-151)||(9574-9717)
[»] scaffold0342 (1 HSPs)
scaffold0342 (31-208)||(2169-2349)
[»] scaffold0066 (2 HSPs)
scaffold0066 (31-206)||(44551-44729)
scaffold0066 (31-206)||(52747-52925)
[»] chr4 (12 HSPs)
chr4 (31-182)||(32462032-32462185)
chr4 (31-208)||(9793809-9793990)
chr4 (31-182)||(23271675-23271828)
chr4 (31-173)||(22737019-22737161)
chr4 (7-127)||(55378347-55378466)
chr4 (31-179)||(8043531-8043682)
chr4 (31-164)||(14503083-14503219)
chr4 (8-79)||(19699178-19699249)
chr4 (8-79)||(19709763-19709834)
chr4 (7-147)||(13448616-13448758)
chr4 (7-147)||(13595605-13595747)
chr4 (11-77)||(7848885-7848951)
[»] scaffold0032 (1 HSPs)
scaffold0032 (31-208)||(14944-15125)
[»] scaffold0029 (1 HSPs)
scaffold0029 (31-208)||(67179-67360)
[»] scaffold0686 (2 HSPs)
scaffold0686 (8-151)||(28-171)
scaffold0686 (8-141)||(7508-7640)
[»] scaffold0132 (1 HSPs)
scaffold0132 (8-151)||(12352-12495)
[»] scaffold1486 (1 HSPs)
scaffold1486 (31-206)||(1422-1601)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-141)||(167711-167843)
[»] scaffold0023 (1 HSPs)
scaffold0023 (31-206)||(58027-58206)
[»] scaffold0173 (1 HSPs)
scaffold0173 (45-207)||(3930-4094)
[»] scaffold1666 (1 HSPs)
scaffold1666 (60-208)||(1100-1251)
[»] scaffold0012 (1 HSPs)
scaffold0012 (31-216)||(35321-35507)
[»] scaffold0892 (1 HSPs)
scaffold0892 (1-71)||(2426-2496)
[»] scaffold0138 (3 HSPs)
scaffold0138 (7-79)||(26831-26903)
scaffold0138 (8-79)||(27846-27917)
scaffold0138 (8-79)||(39842-39913)
[»] scaffold0191 (1 HSPs)
scaffold0191 (1-79)||(252-331)
[»] scaffold0158 (1 HSPs)
scaffold0158 (8-79)||(23393-23464)
[»] chr1 (1 HSPs)
chr1 (8-79)||(20252723-20252794)
[»] scaffold0561 (1 HSPs)
scaffold0561 (7-168)||(4342-4505)
[»] scaffold0009 (1 HSPs)
scaffold0009 (7-127)||(98562-98683)
[»] scaffold0165 (2 HSPs)
scaffold0165 (7-151)||(28553-28699)
scaffold0165 (94-151)||(20569-20626)
[»] scaffold0020 (1 HSPs)
scaffold0020 (7-151)||(104398-104542)
[»] scaffold0118 (1 HSPs)
scaffold0118 (31-78)||(35746-35794)
[»] scaffold0133 (1 HSPs)
scaffold0133 (7-147)||(3285-3427)
[»] scaffold0258 (1 HSPs)
scaffold0258 (62-124)||(8740-8803)


Alignment Details
Target: scaffold0017 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42451 - 42220
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  42451 tggtgataattatgatgttctatcggcatcatgggcgacggcctaattattggtcagattggtaccgcatgcatatagagttgtgtctaggatcatatca 42352  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaa-tttggtgtcatgcta 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  42351 tgttgtggcatgagtcctagttgtgaaattacttgatttacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattttggtgtcatgtta 42252  T
Q  200 tgattaattctgtaaatgacgaatattgatga 231  Q
    ||||||||| ||||||||||||||||||||||    
T  42251 tgattaattttgtaaatgacgaatattgatga 42220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 18617650 - 18617426
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  18617650 gattatgatgttctgccggcatcatgggcgacgacctaaatattggtgagatcggtaccgcatgcatttagagttgtgtctaggatcatatcatgttgtg 18617551  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaa-tttggtgtcatgctatgattaa 206  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  18617550 gcatgagtcctagttgtgaaattacttgatatacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattttggtgtcatgttatgattaa 18617451  T
Q  207 ttctgtaaatgacgaatattgatga 231  Q
    || ||||||||||||||||||||||    
T  18617450 ttttgtaaatgacgaatattgatga 18617426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 21495807 - 21495987
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || | |||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  21495807 atgggcgacggcctaaatattggtgatgaccagtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 21495906  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| | |||||||| |||||||||||    
T  21495907 ttacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtacttgatggattgttgtgtcatgttatgattaatt 21495987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 22885127 - 22884945
Alignment:
Q  31 atgggcgacggcctaaa--tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtga 126  Q
    |||||||||||||||||  ||||||||| || ||||||| |||||||||||| |||||||||| |||||||||||   ||| ||||||||||||||||||    
T  22885127 atgggcgacggcctaaaaatattggtgatgaccggtaccacatgcatatagatgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtga 22885028  T
Q  127 aattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| || |||||| ||| | |||||||| |||||||||||    
T  22885027 aattacttgatgtacttgtggttgtaagtgattgatggtgatgtttatacttgatggattgttgtgtcatgttatgattaatt 22884945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 41508666 - 41508809
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| | |||||||| |||||||||||||| ||    
T  41508666 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggcaacgcatgcatatag-ggtgtgtctaggatcatatcatgttttg 41508764  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  41508765 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 41508809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 18610856 - 18610785
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18610856 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 18610785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 45476020 - 45476112
Alignment:
Q  60 cggtaccgcatgcatata-gagttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    ||||||||||||||| || | || ||||||| |  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  45476020 cggtaccgcatgcatttatgtgtcgtgtctaggggcatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtggttgt 45476112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 20708386 - 20708244
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatatagagtt-gtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||||||  ||||||||| |  |||||||   | ||||||||||||| |||   | ||||||| || |||||||||||    
T  20708386 tgattatggtgttctgttggcatcatggggtgacggcctagacgttggtgacgacagtaccgcatgcatttaggtatcgtgtctaggaacatatcatgtt 20708287  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    ||||||||||| ||| |||||||| || ||||| |||||||||    
T  20708286 gtggcatgagttctaattgtgaaaataattgatatacttgtgg 20708244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 16000754 - 16000622
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgtt 104  Q
    ||||| ||||||||  | |||||||||||  ||||||||| | |||| |||  ||||||| |||||||| |||  || ||||||| || |||| || |||    
T  16000754 tgattgtgatgttcagttggcatcatggggtgacggcctagacattgttgatgtcggtacggcatgcatttaggtgtcgtgtctaggaacataccacgtt 16000655  T
Q  105 gtggcatgagtcctagttgtgaaattacttgat 137  Q
    ||||||||||||||| |||||||| || |||||    
T  16000654 gtggcatgagtcctaattgtgaaaatatttgat 16000622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 16041133 - 16041182
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga 79  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| ||||    
T  16041133 atgggcgacagcctaaatattggtgatgaccggtaccgcatgcatctaga 16041182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 16042809 - 16042858
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga 79  Q
    ||||||||| |||||||||||||||| || ||||||||||||||| ||||    
T  16042809 atgggcgacagcctaaatattggtgatgaccggtaccgcatgcatctaga 16042858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 21233697 - 21233754
Alignment:
Q  94 catatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    |||||||| ||||||||||||||||| || ||||| || ||||| |||||| ||||||    
T  21233697 catatcatattgtggcatgagtcctaattttgaaaataattgatatacttgcggttgt 21233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1845 - 1614
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  1845 tggtgatgattatgatgttctatcggcatcatgggcgaaagcctaaatattggtgagatcggtaccgcatgcatatagagttatgtctaggatcatatca 1746  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  1745 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattattggtgatgtttgtatttgatgaattgtggtgtcatgtta 1646  T
Q  200 tgattaattctgtaaatgacgaatattgatga 231  Q
    ||||||||| | | ||||| ||||||||||||    
T  1645 tgattaattttttgaatgatgaatattgatga 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 47482424 - 47482655
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  47482424 tggtgatgattatgatgttctatcggcatcatgggcgacaacctaaatattggtgagatcggtaccgcatgtatatagagttgtgtctaggatcatatca 47482523  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  47482524 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattagtggtgatgtttgtatttgatgaattgtggtgtcatgtta 47482623  T
Q  200 tgattaattctgtaaatgacgaatattgatga 231  Q
    |||||||||  || ||||| ||||||||||||    
T  47482624 tgattaatttcgtgaatgatgaatattgatga 47482655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48623866 - 48624095
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| | |||||| ||||||||||    
T  48623866 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaattattagtgagaatggtaccgcatgcatatagagatatgtctaggatcatatca 48623965  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||    
T  48623966 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaacggtgatgtttgtatttgatgaattgttgtgtcatgtta 48624065  T
Q  200 tgattaattctgtaaatgacgaatattgat 229  Q
    ||||||||| ||| ||||| ||||||||||    
T  48624066 tgattaattttgtgaatgatgaatattgat 48624095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 3048393 - 3048213
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| ||   |||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  3048393 atgggcgacggcctaaatattggtgatgacatgtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 3048294  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | || ||||| |||||||||||    
T  3048293 ttacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtatcatgttatgattaatt 3048213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 13319961 - 13319783
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    ||||| ||| |||||||||||||||| |||||||||| |||||||||| | |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  13319961 atgggtgacagcctaaatattggtgatgatcggtaccacatgcatatatatgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 13319862  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| | ||||||||  ||||||||    
T  13319861 ttacttgatgtacttgtggttgtaagtgattaatggtgatatttgtatttgatggattgtcgtgtcatgtcatgattaa 13319783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 7286041 - 7286160
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatg-ttg 105  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||||||| |||||||||||| |||    
T  7286041 tgattatgatgttctatcggcatca-gggcgacggcctaa-tattggtgtgaccgataccgcatgcatatagagttgtgtctaggatcatatcatgattg 7286138  T
Q  106 tggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||||||||    
T  7286139 tggcatgagtcctagttgtgaa 7286160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 25122898 - 25122770
Alignment:
Q  23 tcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtggcatgagtcctagtt 122  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||    
T  25122898 tcggcatcaagggcgacggcctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttgtggcatgagtcgtagtt 25122800  T
Q  123 gtgaaattacttgatgtac-ttgtggttgt 151  Q
    |||||  || ||||||||| ||||||||||    
T  25122799 gtgaatgtagttgatgtacattgtggttgt 25122770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 14252908 - 14252979
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  14252908 gattatgatgttctgtcggcatcatgggcgacgacctaaatattggtgagaccggtaccgcatgcatctaga 14252979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 28389033 - 28388887
Alignment:
Q  7 tgattatgatgttctatcggcatcatggg-cgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | ||||||||||| |||||||||| |  |||||||   ||||||||||||||| || | || |||||||||  |||||||| ||    
T  28389033 tgattatggtgttctgttggcatcatggggcgacggcctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctatgggcatatcatatt 28388934  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
     |||||||||||||| |||||||| || ||||| ||||||| |||||    
T  28388933 atggcatgagtcctaattgtgaaaataattgatatacttgtagttgt 28388887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 9641640 - 9641498
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgtt 104  Q
    ||||||||||||| | | ||| |||||||  ||||||||| |  |||||||   ||||||||||||||| |||  || ||||||| |  |||| ||||||    
T  9641640 tgattatgatgttatgttggcctcatggggtgacggcctagacgttggtgatgacggtaccgcatgcatttaggtgtcgtgtctagggacataccatgtt 9641541  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    ||||||||||||||| |||||||| || ||||| |||||||||    
T  9641540 gtggcatgagtcctaattgtgaaaataattgatatacttgtgg 9641498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7527810 - 7527579
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7527810 tggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 7527711  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    |||||||||||||||||| ||||||||||||||| |||| ||| |||||||| | ||||||||||||||||||||||||||| ||| | |||||||||||    
T  7527710 tgttgtggcatgagtccttgttgtgaaattacttaatgtgcttatggttgtaagcgattaatggtgatgtttgtatttgatggattgttgtgtcatgcta 7527611  T
Q  200 tgattaattctgtaaatgacgaatattgatga 231  Q
    ||||||||| ||| ||||| ||||||||||||    
T  7527610 tgattaattttgtgaatgatgaatattgatga 7527579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17908370 - 17908164
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17908370 tggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 17908271  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||  |    
T  17908270 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtca 17908171  T
Q  200 tgattaa 206  Q
    |||||||    
T  17908170 tgattaa 17908164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 23985867 - 23986028
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    |||||||||||||| ||||| || |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  23985867 tggtgatgattatggtgttcaattggcatcatggacgacggcctaaatattggtcagaccggtaccgcatgcatatagagttgtgtctaggatcatatca 23985966  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaat 162  Q
    |||||||||||||||||||||||||| | || | ||||||||||||||||| | ||||||||    
T  23985967 tgttgtggcatgagtcctagttgtgagagtattcgatgtacttgtggttgtgcatgattaat 23986028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 32949772 - 32949619
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  32949772 atgggcgatggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 32949673  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  32949672 ttacttgatgtacttgtggttgtaagtgatttatggtgatgtttgtatttgatg 32949619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 2030515 - 2030372
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |  | |||||||| |||||||||||||||||    
T  2030515 gattatgatgttctgtcggcatcaggggcgacggcctaaatattggtgagaccggtaccgcatgcataca-tggtgtgtctaggatcatatcatgttgtg 2030417  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  2030416 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 2030372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 25003563 - 25003444
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| | |||||||  ||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25003563 gattatgatgttctgttggcatcacaggcgacaacctaaatattggtgagaccggtaccacatgcatatagagttgtgtctaggatcatatcatgttgtg 25003464  T
Q  108 gcatgagtcctagttgtgaa 127  Q
    | ||||||| ||||||||||    
T  25003463 gaatgagtcttagttgtgaa 25003444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 34938047 - 34937976
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  34938047 gattatgatgttctgtcggcatcatgggcgacgacctaaatattggtgagactggtaccgcatgcatctaga 34937976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 23235984 - 23236126
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||||||  ||||||||| |  ||||||| | ||||||||||||||| |||  ||| |||||| || | || ||||||    
T  23235984 tgattatggtgttctgttggcatcatggggtgacggcctagacgttggtgacaacggtaccgcatgcatttaggtgttatgtctaggaacttaccatgtt 23236083  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    ||||||||||| ||| |||||||| || ||||| |||||||||    
T  23236084 gtggcatgagttctaattgtgaaaataattgatatacttgtgg 23236126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 22254992 - 22254786
Alignment:
Q  3 gtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatg 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22254992 gtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg 22254893  T
Q  103 ttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctat 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||| |||    
T  22254892 ttgtggcatgagtcctagttgtgcaaattacttgatgtacttgtggttgtacgtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttat 22254793  T
Q  201 gattaat 207  Q
    |||||||    
T  22254792 gattaat 22254786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 28032576 - 28032806
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28032576 tggtgatgattatgatgttttgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 28032675  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||| ||| | |||| ||| ||    
T  28032676 tgttgtggcatgagtcctagttgtg-aattacttgatgtacttgtggatgtaagtgatgaatggtgatgtttgtgtttgatggattgttgtgttatgtta 28032774  T
Q  200 tgattaattctgtaaatgacgaatattgatga 231  Q
    ||||||||| ||| ||||| || |||| ||||    
T  28032775 tgattaattttgtgaatgatgattattaatga 28032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 17203238 - 17203020
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  17203238 tggtgatgattatgatgttctgtcggcatcatgggcgacgacctgaatattggtgagatcggtaccgcatgcatatagagttgtgtttaggatcatatca 17203139  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |  ||||||| ||    
T  17203138 tgttgtggcatgagtcctagttgtgaaattatttgatgtacttgtggttgtaagtgattaaaggtgatgtttgtatttgatggattgttatgtcatgtta 17203039  T
Q  200 tgattaattctgtaaatga 218  Q
    ||| ||||| ||| |||||    
T  17203038 tgactaattttgtgaatga 17203020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 25254853 - 25254993
Alignment:
Q  68 catgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtg 166  Q
    |||||||||||  |||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25254853 catgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattaatggtg 25254952  T
Q  167 atgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
    |||||||||||||||| ||| | ||||||||  ||||||||    
T  25254953 atgtttgtatttgatggattgttgtgtcatgtcatgattaa 25254993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 23779422 - 23779574
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtg-a 126  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||| |    
T  23779422 atgggcgacggcctaaaatattggtgatgaacggtaccgcatgcatatagttgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgca 23779521  T
Q  127 aattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttg 179  Q
    |||||||||||| ||||||||||||| |||| || ||||||||||||||||||    
T  23779522 aattacttgatgaacttgtggttgtaagtgagtagtggtgatgtttgtatttg 23779574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 32464571 - 32464398
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgt 106  Q
    ||||||||||||||| ||||||||| |||||||  ||||| |||||||| ||  |||||| |||||||||||||||||||||| ||||||||||||||||    
T  32464571 tgattatgatgttctgtcggcatca-gggcgacaacctaa-tattggtgtgactggtaccacatgcatatagagttgtgtctaggatcatatcatgttgt 32464474  T
Q  107 ggcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgtacgtgattaatggtgatgtttgtatttgat 181  Q
    | |||||||||||||||||||  || ||||||| | ||||||||||   | |||||| |||||| || ||||||||    
T  32464473 gacatgagtcctagttgtgaatgtatttgatgtgcattgtggttgtgaataattaattgtgatgattatatttgat 32464398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 42179974 - 42180045
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||    
T  42179974 gattatgatgttctgtcggcatcatgggtgacgacctaaatattggtgagaccggtaccgcatgcatctaga 42180045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 16294320 - 16294483
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||||||  ||||||||| |  |||||||   ||||||||||||||| || | || ||||||| |  |||||||| ||    
T  16294320 tgattatggtgttctgttggcatcatggggtgacggcctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctaggggcatatcatatt 16294419  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgat 168  Q
    ||||||||||||||| |||||||| || ||||| |||||||||||||  |||||| || |||||    
T  16294420 gtggcatgagtcctaattgtgaaaataattgatatacttgtggttgtgagtgattgattgtgat 16294483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 7513621 - 7513671
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgaga 58  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  7513621 gattatgatgttctgtcggcatcatgggcgacagcctaaatattggtgaga 7513671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9613 - 9819
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  9613 tggtgatgattatgatgttctgtcagcatcatgggcgacagcctaattattggtgagatcggaaccgcatgcatatagagttgtgtctaggatcatatca 9712  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgcta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||| | |||| ||| ||    
T  9713 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttggaagtgattgatggtgatgtttgtatttgatggattgttgtgttatgtta 9812  T
Q  200 tgattaa 206  Q
    |||||||    
T  9813 tgattaa 9819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 16301584 - 16301755
Alignment:
Q  9 attatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtgg 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16301584 attatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatag-taccgcatgcatatagagttgtgtctaggatcatatcatgttgtgg 16301682  T
Q  109 catgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  16301683 catgagtcctagttgtgaaa-tacttgatttacttgtggttgtaagtgattaatggtgatgtttgtgtttgatg 16301755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 32278117 - 32278297
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||  ||  ||| ||||||||||||||||||||    
T  32278117 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatattttgaggtgacatgagtcctagttgtgaaa 32278216  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||| | |||||||| |||||||||||    
T  32278217 ttacttgatgtacttgtggttgtaagtgattgatggtgatgtttatatttgatggattgttgtgtcatgttatgattaatt 32278297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 29664880 - 29664727
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  || ||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  29664880 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 29664781  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  29664780 ttacttgatgtacgtgtggttgtaagtgattaatggtgatgtttgtgtttgatg 29664727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 14151165 - 14150999
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgt 106  Q
    |||| ||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  || ||||||| ||||||||||||||||    
T  14151165 gattttgatgttttgtcggcatcatgggcgacgacctaaatattggtgagaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgttgt 14151066  T
Q  107 ggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttg 173  Q
    ||||||||| |||||||||||| || ||||||| ||| |||||||  ||||||||| ||||| ||||    
T  14151065 ggcatgagtgctagttgtgaaaatatttgatgtgcttatggttgtgagtgattaattgtgatatttg 14150999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 27739701 - 27739537
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtga-gatcggtaccgcatgcatatagagttgtgtctatgatcatatcatg-ttg 105  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| || || || ||||||| ||||| || ||||||| |||||||||||| |||    
T  27739701 gattatgatgttctgttggcatcatgggcgacggcctaaatattggtgatgaccgatatcgcatgcctatagtgtcgtgtctaggatcatatcatgattg 27739602  T
Q  106 tggcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgtacgtgattaatggtgatg 169  Q
    ||||||||||||||||||||||  || ||||||||| | |||||||| | |||||||| ||||||    
T  27739601 tggcatgagtcctagttgtgaatgtagttgatgtacgtggtggttgtgcatgattaattgtgatg 27739537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 19627926 - 19627855
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  19627926 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19627855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 31469115 - 31469261
Alignment:
Q  7 tgattatgatgttctatcggcatcat-gggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||| ||| ||||||||| |  |||||||   ||||||||||||||| || | || ||||||| |  |||||||| ||    
T  31469115 tgattatggtgttctgttggcatcatagggtgacggcctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctagggacatatcatatt 31469214  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||||    
T  31469215 gtggcatgagtcctaattgtggaaataattgatatacttgtggttgt 31469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 35010882 - 35010930
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtga 56  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  35010882 gattatgatgttctgtcgacatcatgggcgacggcctaaatattggtga 35010930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 19671077 - 19670935
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||||||  |||| |||| |  |||||||   ||||||||||||||| || | || ||||||| |  |||||||| ||    
T  19671077 tgattatggtgttctgttggcatcatggggtgacgacctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctagggacatatcatatt 19670978  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    ||||||||||||||| |||||||| || ||||| |||||||||    
T  19670977 gtggcatgagtcctaattgtgaaaataattgatatacttgtgg 19670935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 26523725 - 26523790
Alignment:
Q  60 cggtaccgcatgcatata-gagttgtgtctatgatcatatcatgttgtggcatgagtcctagttgt 124  Q
    ||||||||||||||| || |||| ||||||| || ||||  |||||||||||||||||||||||||    
T  26523725 cggtaccgcatgcatgtaagagtcgtgtctaggaacatagtatgttgtggcatgagtcctagttgt 26523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30168 - 29960
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatat 98  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  30168 tggtgatgattatgatgttttgtcggcatcatgggcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttgtgtctaggatcatat 30069  T
Q  99 catgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgc 197  Q
    ||||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||     
T  30068 catgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgt 29969  T
Q  198 tatgattaa 206  Q
     ||||||||    
T  29968 catgattaa 29960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9304214 - 9304422
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatat 98  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  9304214 tggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttgtgtctaggatcatat 9304313  T
Q  99 catgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgc 197  Q
    ||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | || |||||     
T  9304314 catgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtatcatgt 9304413  T
Q  198 tatgattaa 206  Q
    |||||||||    
T  9304414 tatgattaa 9304422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 12903346 - 12903526
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatc 99  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  12903346 tggtgatgattatgatgttctgtcggcatcatgggcgatggcctaaatattggtgagatcggtaccgcatgcatataggtgttgtgtctaggatcatatc 12903445  T
Q  100 atgttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttg 179  Q
    |||  |||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||| |||||    
T  12903446 atgaggtggcatgagacctagttgtgcaaattacttgatgttcttgtggttgtaagtgattaatagtgatgtttgcatttg 12903526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 14283971 - 14283791
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  14283971 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 14283872  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| | |||||||| |||||||||||    
T  14283871 ttacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtacttgatggattgttgtgtcatgttatgattaatt 14283791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 23887686 - 23887866
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  23887686 atgggcgacggcctaaatattggtgatgaccggtaccgcatacatataggtgttgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaaa 23887785  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  23887786 ttacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaatt 23887866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 38166712 - 38166532
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||  | |||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  38166712 atgggcgacggcctaaatattggtgatgaccggtgccgcatgcatataggtgctgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 38166613  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  38166612 ttacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatgtattgttgtgtcatgttatgattaatt 38166532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 11987665 - 11987843
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  |||   ||||||||||||||||||    
T  11987665 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgaattgagtcctagttgtgaaa 11987764  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||  ||||||||    
T  11987765 ttacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaa 11987843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 17936908 - 17936729
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  17936908 atgggcgacggcctaaatattggtgatgaacggaaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 17936809  T
Q  129 -ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
     |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | |||||||| |||||||||    
T  17936808 attacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaa 17936729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 51962704 - 51962847
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||    
T  51962704 gattatgatgttctgtcggcatcaagggcgacgggctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttgtg 51962802  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  51962803 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 51962847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 18738481 - 18738353
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtga-gatcggtaccgcatgcatatagagttgtgtctatgatcatatc 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||| ||||||| |    
T  18738481 tggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgatgatcagtaccgcatgcatatagtgtcgtgtctaggatcataac 18738382  T
Q  100 atg-ttgtggcatgagtcctagttgtgaa 127  Q
    ||| |||||||||||||||||||||||||    
T  18738381 atgattgtggcatgagtcctagttgtgaa 18738353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 11480578 - 11480759
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||||||  |||||||||| |||||||||||   ||| |||||||||||||||||||    
T  11480578 atgggcgacggcctaaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtgaa 11480677  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||  | |||||| ||| | |||||||  |||||||||||    
T  11480678 attacttgatgtacttgtggttgtaaatgattgatggtgatgtttacacttgatggattgttgtgtcatattatgattaatt 11480759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 54040152 - 54040223
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  54040152 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccacatgcatctaga 54040223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 54049439 - 54049510
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  54049439 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccacatgcatctaga 54049510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 11637102 - 11636956
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||| | | |||||||||||  ||||||||| |  |||||||   |||||| |||||||| || | || ||||||| |  |||||||| ||    
T  11637102 tgattatggtgttatgttggcatcatggggtgacggcctagacgttggtgatgacggtactgcatgcatttatgtgtcgtgtctaggggcatatcatatt 11637003  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    ||||||||||||||| |||||||| || ||||| |||||||||||||    
T  11637002 gtggcatgagtcctaattgtgaaaataattgatatacttgtggttgt 11636956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 165941 - 166107
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatca 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  165941 tggtgatgattatgatgttctgtcggcatcatgggctacggcctaaatat-ggtgagatcggtaccgcatgcatatagggttgtgtctaggatcatatca 166039  T
Q  101 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgat 168  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||||||    
T  166040 tgttgtggcatgagtcctagttgtaaaattacttgatgttcttatggttgtaagtgattaatggtgat 166107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 7562 - 7742
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatc 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||    
T  7562 tggtgatgattatgatgttctatcggcatcatgggcggcggcctaaatattggtgagatcggtaccgcatgcatataggtgttgtgtataggatcatatc 7661  T
Q  100 atgttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttg 179  Q
    |||  ||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  7662 atgaggtgacatgagtcctagttgtgcaaattacttgatgtacttgtggatgtaagtgattaatggtgatgtttgcatttg 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 16612 - 16432
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||  ||| || |||||||||||||||||    
T  16612 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatatagatgttgtgtctaggatcatatcatgaggtgacacgagtcctagttgtgaaa 16513  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  16512 ttacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaatt 16432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 17886 - 17734
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  17886 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 17787  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  17786 ttacttgatgtacttgtggttgtaagtgattaatggtgatg-ttgtatttgatg 17734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 9574 - 9717
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| ||    
T  9574 gattatgatgttctatcggcatcaggggcgacggcctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttatg 9672  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  9673 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 9717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 2169 - 2349
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  2169 atgggcgacggtctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 2268  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||| | || ||||| |||||||||||    
T  2269 ttacttgatgtacttgtggttgtaagtgattgatggtgatgtttatatttgatggattgttgtatcatgttatgattaatt 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 44729 - 44551
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  || ||||||| ||||||||||||  ||| ||||||| ||||||||||||    
T  44729 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagttctagttgtgaaa 44630  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||  ||||||||    
T  44629 ttacttgatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaa 44551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 52925 - 52747
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  || ||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  52925 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 52826  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaa 206  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||  ||||||||    
T  52825 ttacttaatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaa 52747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 32462032 - 32462185
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||  |||||||| | ||||||||||||  ||| ||||||||||||||||||||    
T  32462032 atgggcgacggcctaaatattggtgatgaccggtactgcatgcatataggtgttgtgtccaggatcatatcatgaggtgacatgagtcctagttgtgaaa 32462131  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  32462132 ttacttgatgtacttgtggttgtaagtgattaatgatgatgtttgtatttgatg 32462185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 9793990 - 9793809
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||| |||  |||||||||| |||||||||||   ||| |||||||||||||||||||    
T  9793990 atgggcgacggcctaaaatattggtgatgaccggtaccgcatgcatgtaggtgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtgaa 9793891  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  9793890 attacttgatgtactcgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaatt 9793809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 23271675 - 23271828
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  23271675 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 23271774  T
Q  129 ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatg 182  Q
    ||| |||||||||||||| ||||  |||||||||||||||| ||||||||||||    
T  23271775 ttaattgatgtacttgtgattgtgagtgattaatggtgatgcttgtatttgatg 23271828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 22737161 - 22737019
Alignment:
Q  31 atgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaatt 130  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22737161 atgggcgatggcctaaatattggtgagaccggtaccgcatgcatatagagtggtgtctaggatcatatcatgatgtggcatgagtcctagttgtgaaatt 22737062  T
Q  131 acttgatgtacttgtggttgtacgtgattaatggtgatgtttg 173  Q
    ||||| | | |||||| ||||   ||||| |||||||||||||    
T  22737061 acttgttatgcttgtgattgtgaatgattcatggtgatgtttg 22737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 55378347 - 55378466
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatg-ttg 105  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||| |||    
T  55378347 tgattatgatgttctgtcggcatca-gggcgacggcctaa-tattggtgtgaccggtaccgcatgcatatagagttgtgtctaggatcatatcatgattg 55378444  T
Q  106 tggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||||||||    
T  55378445 tggcatgagtcctagttgtgaa 55378466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 8043682 - 8043531
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||  ||| |||||| ||||||||||||  ||| ||||||||||||||||||||    
T  8043682 atgggcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttatgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaa 8043583  T
Q  129 -ttacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttg 179  Q
     ||| ||||||| ||||||||||||  ||||| |||||||||||||||||||    
T  8043582 attaattgatgtgcttgtggttgtaaatgattgatggtgatgtttgtatttg 8043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 14503083 - 14503219
Alignment:
Q  31 atgggcgacggcctaaat-attggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||  ||| |||||||||||  ||||||    
T  14503083 atgggcgacggcctaaattattggtgatgatcggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctaactgtgaa 14503182  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatgg 164  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  14503183 attacttgatgtacttgtggttgtaagtgattgatgg 14503219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 19699178 - 19699249
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  19699178 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19699249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 19709763 - 19709834
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  19709763 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19709834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 13448616 - 13448758
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    ||||||||||||||| | |||||||||||  ||||||||| |  |||||||   ||||||||||||||| || | ||  |||||| |  |||||||| ||    
T  13448616 tgattatgatgttctgttggcatcatggggtgacggcctagacgttggtgacgacggtaccgcatgcatttatgcgtcatgtctagggacatatcatatt 13448715  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    |||||||||||||||||||||||| || | ||| |||||||||    
T  13448716 gtggcatgagtcctagttgtgaaaataatggatatacttgtgg 13448758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 13595605 - 13595747
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgtt 104  Q
    ||||||||||||| | | ||| |||||||  ||||||||| |  |||||||   ||||||||||||||| |||  || ||||||| |  |||| ||||||    
T  13595605 tgattatgatgttatgttggcctcatggggtgacggcctagacgttggtgatgacggtaccgcatgcatttaggtgtcgtgtctagggacataccatgtt 13595704  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    ||||||||||||||| |||||||| || ||||| |||||||||    
T  13595705 gtggcatgagtcctaattgtgaaaataattgatatacttgtgg 13595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 7848951 - 7848885
Alignment:
Q  11 tatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatata 77  Q
    ||||||||||| |||||||||  ||||||  ||||| |||||||||||  |||||| ||||||||||    
T  7848951 tatgatgttctgtcggcatcaaaggcgacaacctaattattggtgagactggtaccacatgcatata 7848885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 14944 - 15125
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||| |||  |||||||||| |||||||||||   ||| ||||||||||| |||||||    
T  14944 atgggcgacggcctaaaatattggtgatgaccggtaccgcatgcatgtaggtgttgtgtctaggatcatatcataaggtgacatgagtcctaattgtgaa 15043  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||    
T  15044 attacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaatt 15125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 67179 - 67360
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    |||||||||| |||||| ||||||||| || |||||||||||||||||||  |||||||||| |||||||||||   ||| ||||||||| |||||||||    
T  67179 atgggcgacgacctaaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcataaggtgacatgagtcccagttgtgaa 67278  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | |||||||| |||||||||||    
T  67279 attacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttaatggattgttgtgtcatgttatgattaatt 67360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 28 - 171
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |  | |||||||| |||||||||||||||||    
T  28 gattatgatgttctgtcggcatcaagggcgacgacctaaatattggtgagaccggtaccgcatgcataca-tggtgtgtctaggatcatatcatgttgtg 126  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  127 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 7508 - 7640
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||  ||    
T  7508 gattatgatgttctgtcggcatcaagggcgacgacctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgtaatg 7606  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac 141  Q
    ||||||||||||||||||||  || |||||||||    
T  7607 gcatgagtcctagttgtgaatgtagttgatgtac 7640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 12495 - 12352
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||| | |||||||||||||||||   |||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||    
T  12495 gattatgatgttttttcggcatcatgggcgactttctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttgtg 12397  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 151  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  12396 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 1601 - 1422
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||||| |||  || ||||||||||||||||||||  ||| |||||||||||||||||||    
T  1601 atgggcgacggtctaaaatattggtgatgaccggtaccgcatgcatttaggtgtcgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaa 1502  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatttg-gtgtcatgctatgattaa 206  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||| ||| | ||||||||  ||||||||    
T  1501 attacttaatgtacttgtagttgtaagtgattaatggtgatgtttgtatatgatggattggtgtgtcatgtcatgattaa 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 167711 - 167843
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctatgatcatatcatgttgtg 107  Q
    |||||||||||||| ||||||||| ||| ||||  |||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||    
T  167711 gattatgatgttctgtcggcatcaagggagacgaactaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttgtg 167809  T
Q  108 gcatgagtcctagttgtgaaattacttgatgtac 141  Q
    ||||||||||||||||||||  || |||||||||    
T  167810 gcatgagtcctagttgtgaatgtagttgatgtac 167843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 58027 - 58206
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||| |||  || ||||||| ||||||||||||  ||| |||||||||||||||||||    
T  58027 atgggcgacggcctaaaatattggtgatgaccggtaccgcatgcatgtaggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaa 58126  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatttg-gtgtcatgctatgattaa 206  Q
    ||||||| |||||||||| |||||| |||||||||||| |||||||||| ||||| ||| | ||||||||  ||||||||    
T  58127 attacttaatgtacttgtagttgtaagtgattaatggtaatgtttgtatatgatggattggtgtgtcatgtcatgattaa 58206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 4094 - 3930
Alignment:
Q  45 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 142  Q
    |||||||||||| || || ||||||||| ||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  4094 aaatattggtgatgaccgataccgcatgtatataggtgttgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaa-ttacttgatgtact 3996  T
Q  143 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaat 207  Q
    ||||||||||||||||| ||||||||||| |||||| ||| ||| |  ||||||| ||||||||||    
T  3995 tgtggttgtacgtgattgatggtgatgttcgtatttaatggattgttatgtcatgttatgattaat 3930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1666 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold1666
Description:

Target: scaffold1666; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 1100 - 1251
Alignment:
Q  60 cggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaaa-ttacttgatgtacttgtggttgtacgtga 157  Q
    |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||| |||||||||||| |||| ||||||||||||||||||| ||||    
T  1100 cggtaccgcatgcatataggtgttgtgtctatgatcatatcatgaggtgacatgagttctagttgtgaaaattacgtgatgtacttgtggttgtaagtga 1199  T
Q  158 ttaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaatt 208  Q
    || ||||||||||| ||||||| || ||| | ||| |||| |||||||||||    
T  1200 ttgatggtgatgttagtatttgttggattgttgtgccatgttatgattaatt 1251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 35321 - 35507
Alignment:
Q  31 atgggcgacggcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgttgtggcatgagtcctagttgtgaa 127  Q
    ||||||||| ||||||| ||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||  ||| |||||||   ||||| |||    
T  35321 atgggcgacagcctaaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagt---agttgggaa 35417  T
Q  128 attacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaatt-tggtgtcatgctatgattaattctgtaaat 216  Q
     |||||||||||||||||| |||||  ||||| |||||||||||||||||||||| ||| | || ||||| ||||| ||||| |||||||    
T  35418 tttacttgatgtacttgtgattgtaaatgattcatggtgatgtttgtatttgatggattgttgtatcatgttatgagtaattatgtaaat 35507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2496 - 2426
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  2496 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaattattggtgagattggtaccgcatg 2426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 26903 - 26831
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26903 tgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 26831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 27917 - 27846
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  27917 gattatgatgttctgtcggcattatgggcgacggcctaaatattgatgagaccggtaccgcatgcatctaga 27846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 39913 - 39842
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  39913 gattatgatgttctgtcggcattatgggcgacggcctaaatattgatgagaccggtaccgcatgcatctaga 39842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 252 - 331
Alignment:
Q  1 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaaatattggtga-gatcggtaccgcatgcatataga 79  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||    
T  252 tggtgatgattatgatgttctatcggcatcatgggcgacgacctaaatattggtgatgaacggtaccgcatgcatctaga 331  T

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Target: scaffold0158 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 23464 - 23393
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  23464 gattatgatgttctgtcggcatcatgggcgacggcctaaatatttgtgagaccggtaccgcatgcatctaga 23393  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 20252794 - 20252723
Alignment:
Q  8 gattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatataga 79  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  20252794 gattatgatgttctgtcggcatcatgggtgacggcctaaatattggtgagaccggtaccgcatgcatctaga 20252723  T

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Target: scaffold0561 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 4342 - 4505
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggc-gacggcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctatgatcatatcatgtt 104  Q
    ||||||||||||||| | | |||||||||  ||||||||| |  ||||||| | ||||||||||||||| |||  || ||||||| |  |||| ||||||    
T  4342 tgattatgatgttctgttgacatcatggggtgacggcctagacgttggtgacaacggtaccgcatgcatttaggtgtggtgtctagggacataccatgtt 4441  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgat 168  Q
    ||||||||||||||| |||||||| || ||||| ||||||||| |||  |||||| || |||||    
T  4442 gtggcatgagtcctaattgtgaaaataattgatatacttgtggatgtgagtgattgattgtgat 4505  T

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Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 98562 - 98683
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgttg 105  Q
    ||||||||||||||| | ||||||||||| ||||||||| |  |||||||  |||||||| ||||||| || | || ||||||| || |||| |||||||    
T  98562 tgattatgatgttctgttggcatcatgggtgacggcctagacgttggtgatgtcggtaccacatgcatttaggtgtcgtgtctaagaacataccatgttg 98661  T
Q  106 tggcatgagtcctagttgtgaa 127  Q
    |||||||| ||||| |||||||    
T  98662 tggcatgactcctaattgtgaa 98683  T

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Target: scaffold0165 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 28699 - 28553
Alignment:
Q  7 tgattatgatgttctatcggcatcat-gggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | |||||||| ||| ||||||||| |  |||||||   ||||||| ||||||| || | || ||||||| |  |||||||| ||    
T  28699 tgattatggtgttctgttggcatcatcgggtgacggcctagacgttggtgacgacggtaccacatgcatttatgtgtcgtgtctagggccatatcatatt 28600  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    ||||||||||||||| |||||||| || ||||| |||||||||||||    
T  28599 gtggcatgagtcctaattgtgaaaatagttgatatacttgtggttgt 28553  T

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Target: scaffold0165; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 20626 - 20569
Alignment:
Q  94 catatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||    
T  20626 catatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtgattgt 20569  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 104542 - 104398
Alignment:
Q  7 tgattatgatgttctatcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgttg 105  Q
    |||||||| |||||| | ||||||||||| |||| |||| |  |||||||   ||||||||||||||| || | || ||||||| |  |||||||| |||    
T  104542 tgattatggtgttctgttggcatcatgggtgacgacctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctagggacatatcatattg 104443  T
Q  106 tggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 151  Q
    ||||||||||||||  ||||||| || ||||  |||||||||||||    
T  104442 tggcatgagtcctaaatgtgaaa-taattgacatacttgtggttgt 104398  T

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Target: scaffold0118 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 35746 - 35794
Alignment:
Q  31 atgggcgacggcctaaatattggtga-gatcggtaccgcatgcatatag 78  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  35746 atgggcgacggcctaaatattggtgatgaccggtaccgcatgcatatag 35794  T

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Target: scaffold0133 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 3285 - 3427
Alignment:
Q  7 tgattatgatgttctatcggcatcatggg-cgacggcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctatgatcatatcatgtt 104  Q
    |||||||| |||||| | ||||||||||| |||||||||| |  |||||||   |||||||||||| || || | || ||||||| |  |||||||| ||    
T  3285 tgattatggtgttctgttggcatcatggggcgacggcctagacgttggtgatgacggtaccgcatgaatttatgtgtcgtgtctaggggcatatcatatt 3384  T
Q  105 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 147  Q
    || |||||||||||| |||||||| || ||||| | |||||||    
T  3385 gtagcatgagtcctaattgtgaaaataattgatatgcttgtgg 3427  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 8803 - 8740
Alignment:
Q  62 gtaccgcatgcatatag-agttgtgtctatgatcatatcatgttgtggcatgagtcctagttgt 124  Q
    ||||| ||||||| ||| ||| ||||||| || |||| ||||||||||||||||||||||||||    
T  8803 gtaccacatgcatgtaggagtcgtgtctaggaacataacatgttgtggcatgagtcctagttgt 8740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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