View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_329 (Length: 230)
Name: NF8810A_low_329
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_329 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26992626 - 26992855
Alignment:
| Q |
1 |
ttccccttaatttttatgttcaacaattatggtatcagagcttctcacggggcctggtgttttggaaattgagagttgagaaactgaagttttcttagtg |
100 |
Q |
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| T |
26992626 |
ttccccttaatttttatgttcaacaattatggtatcagagcttctcacggggcctggtgttttggaaattgagagttgagaaactgaagttttcttagtg |
26992725 |
T |
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| Q |
101 |
agagttagaactccagtaagagtgaaacactgtgagactcgctgtgagagaaacaccaaaggtttgttaaaggaacgacaatggcagcagagaatagcaa |
200 |
Q |
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| T |
26992726 |
agagttagaactccagtaagagtgaaacgctgtgagactcgctgtgagagaaacaccaaaggtttgttaaaggaacgacaatggcagcagagaatagcaa |
26992825 |
T |
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| Q |
201 |
tttcgtccaacctaccatacctagatttga |
230 |
Q |
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| T |
26992826 |
tttcgtccaacctaccatacctagatttga |
26992855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 1755585 - 1755480
Alignment:
| Q |
125 |
aaacactgtgagactcgctgtgagagaaacaccaaaggtttgttaaaggaacgacaatggcagcagagaatagcaatttcgtccaacctaccatacctag |
224 |
Q |
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| T |
1755585 |
aaacactgtgagactaattgagagagaaatactaaaggtttgataaaagaacaataatggcagcagagaatagcaatttcgtccaacctgccataccttg |
1755486 |
T |
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| Q |
225 |
atttga |
230 |
Q |
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| T |
1755485 |
atttga |
1755480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 1755652 - 1755590
Alignment:
| Q |
41 |
cttctcacggggcctggtgttttg-gaaattgagagttgagaaactgaagttttcttagtgag |
102 |
Q |
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| T |
1755652 |
cttctcacggggtctggtgtttttagaatttgagagttgagaaattgaagttttcttggtgag |
1755590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 12793722 - 12793796
Alignment:
| Q |
25 |
aattatggtatcagagcttctcacggggcctggtg-ttttggaaattgagagttgagaaactgaagttttcttag |
98 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||| |||| ||||||| | |||||||| ||||||||||| |
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| T |
12793722 |
aattgtggtatcagagcttctcacgaggcctggtgatttgggaatttgagagctaagaaactgcagttttcttag |
12793796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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